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SMTL ID : 7pn5.1
Evolved unspecific peroxygenase with A77L mutation in complex with hexane
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.82 Å
Oligo State
monomer
Ligands
2 x
HEX
:
HEXANE
(Non-covalent)
HEX.1:
6 residues within 4Å:
Chain A:
Q.72
,
A.73
,
F.76
,
P.277
,
G.314
Ligands:
HEX.5
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:F.76
,
A:F.76
,
A:P.277
HEX.5:
5 residues within 4Å:
Chain A:
A.73
,
F.191
,
T.192
,
F.199
Ligands:
HEX.1
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:A.73
,
A:F.191
,
A:T.192
,
A:F.199
1 x
HEM
:
PROTOPORPHYRIN IX CONTAINING FE
(Non-covalent)
HEM.2:
28 residues within 4Å:
Chain A:
P.35
,
C.36
,
P.37
,
G.38
,
L.39
,
I.59
,
V.63
,
F.67
,
F.69
,
L.77
,
T.78
,
A.81
,
L.115
,
F.121
,
E.122
,
G.123
,
S.126
,
M.127
,
T.128
,
R.129
,
R.189
,
E.196
,
F.199
,
P.200
,
L.203
,
F.204
,
F.223
Ligands:
MG.3
38
PLIP interactions
:
37 interactions with chain A
,
1 Ligand-Water interactions
Hydrophobic interactions:
A:P.35
,
A:P.35
,
A:P.37
,
A:L.39
,
A:I.59
,
A:F.67
,
A:F.69
,
A:F.69
,
A:L.77
,
A:A.81
,
A:L.115
,
A:F.121
,
A:F.121
,
A:F.121
,
A:E.196
,
A:E.196
,
A:F.199
,
A:P.200
,
A:L.203
,
A:L.203
,
A:F.204
,
A:F.223
Hydrogen bonds:
A:G.123
,
A:M.127
,
A:T.128
,
A:T.128
,
A:R.129
,
A:E.196
Water bridges:
A:S.126
,
A:S.126
,
A:S.126
,
A:S.126
,
A:R.169
,
A:R.189
Salt bridges:
A:R.189
pi-Stacking:
A:F.199
Metal complexes:
A:C.36
,
H
2
O.7
1 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.3:
4 residues within 4Å:
Chain A:
E.122
,
G.123
,
S.126
Ligands:
HEM.2
5
PLIP interactions
:
3 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:E.122
,
A:G.123
,
A:S.126
,
H
2
O.2
,
H
2
O.4
1 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.4:
4 residues within 4Å:
Chain A:
P.8
,
D.70
,
N.71
,
P.238
Ligand excluded by PLIP
1 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.6:
3 residues within 4Å:
Chain A:
T.99
,
R.100
,
L.101
6
PLIP interactions
:
6 interactions with chain A
Hydrogen bonds:
A:T.99
,
A:T.99
,
A:R.100
Water bridges:
A:R.100
,
A:R.100
Salt bridges:
A:R.100
4 x
NAG
:
2-acetamido-2-deoxy-beta-D-glucopyranose
(Post Translational Modification)
NAG.7:
7 residues within 4Å:
Chain A:
F.155
,
G.156
,
G.157
,
N.161
,
L.162
,
T.163
,
Q.213
6
PLIP interactions
:
6 interactions with chain A
Hydrophobic interactions:
A:L.162
Hydrogen bonds:
A:T.163
,
A:Q.213
Water bridges:
A:N.161
,
A:N.161
,
A:L.162
NAG.8:
2 residues within 4Å:
Chain A:
N.141
,
L.144
No protein-ligand interaction detected (PLIP)
NAG.9:
4 residues within 4Å:
Chain A:
L.279
,
E.282
,
N.286
,
V.322
6
PLIP interactions
:
6 interactions with chain A
Hydrophobic interactions:
A:L.279
,
A:E.282
Hydrogen bonds:
A:E.282
,
A:E.282
,
A:E.282
,
A:N.286
NAG.10:
3 residues within 4Å:
Chain A:
N.11
,
A.14
,
K.15
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:N.11
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gomez de Santos, P. et al., Engineering a Highly Regioselective Fungal Peroxygenase for the Synthesis of Hydroxy Fatty Acids. Angew.Chem.Int.Ed.Engl. (2023)
Release Date
2023-01-25
Peptides
Aromatic peroxygenase:
A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
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Aromatic peroxygenase
Related Entries With Identical Sequence
7pn4.1
|
7pn6.1
|
7pn7.1
|
7pn8.1
|
7pn9.1
|
7pna.1
Cartoon
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