SMTL ID : 7po5.1

Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain C: L.68, N.69, Q.290, E.943 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain C: N.156, L.165, H.187 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain C: N.676 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain C: N.696 Ligand excluded by PLIP NAG.5: 1 residues within 4Å: Chain C: N.714 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain F: L.68, N.69, Q.290, E.943 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain F: N.156, L.165, H.187 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain F: N.676 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain F: N.696 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain F: N.714 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain I: L.68, N.69, Q.290, E.943 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain I: N.156, L.165 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain I: N.676 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain I: N.696 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain I: F.713, N.714 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Antigenic structure of the human coronavirus OC43 spike reveals exposed and occluded neutralizing epitopes. Nat Commun (2022)

Release Date

2022-04-20

Peptides

47C9 antibody heavy chain: ADG
47C9 antibody light chain: BEH
Spike glycoprotein: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

D
X

G
H

B
D

E
F

H
L

C
B

F
C

I
A

47C9 antibody heavy chain

47C9 antibody light chain

Spike glycoprotein

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