- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x CA: CALCIUM ION(Non-covalent)
CA.5: 9 residues within 4Å:- Chain A: D.383, N.510, F.511, N.512, G.513, L.514, E.515, D.517, D.518
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.383, A:L.514, A:D.518
CA.6: 7 residues within 4Å:- Chain A: D.29, D.151, N.153, L.155, Y.158, S.159, E.160
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:L.155, A:E.160
CA.9: 8 residues within 4Å:- Chain B: D.383, N.510, F.511, N.512, L.514, E.515, D.517, D.518
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:L.514, B:D.517, B:D.518
CA.10: 7 residues within 4Å:- Chain B: D.852, N.974, D.976, R.978, S.979, N.981, D.982
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.852, B:R.978, B:D.982
CA.11: 7 residues within 4Å:- Chain B: D.29, D.151, N.153, L.155, Y.158, S.159, E.160
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.29, B:D.151, B:L.155, B:E.160
CA.14: 8 residues within 4Å:- Chain C: D.852, N.974, F.975, D.976, R.978, S.979, N.981, D.982
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.852, C:D.976, C:R.978, C:D.982
CA.15: 6 residues within 4Å:- Chain D: D.383, N.510, N.512, L.514, D.517, D.518
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:L.514, D:D.517, D:D.518
CA.16: 7 residues within 4Å:- Chain D: D.852, N.974, D.976, R.978, S.979, N.981, D.982
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.852, D:D.976, D:D.976, D:R.978, D:D.982
CA.17: 7 residues within 4Å:- Chain D: D.29, D.151, N.153, L.155, Y.158, S.159, E.160
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.151, D:L.155, D:E.160
CA.20: 8 residues within 4Å:- Chain E: D.383, N.510, F.511, N.512, G.513, L.514, D.517, D.518
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.383, E:L.514, E:D.517, E:D.518
CA.21: 7 residues within 4Å:- Chain E: D.29, D.151, N.153, L.155, Y.158, S.159, E.160
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:D.29, E:L.155, E:E.160
CA.24: 7 residues within 4Å:- Chain F: D.852, N.974, D.976, R.978, S.979, N.981, D.982
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.852, F:D.976, F:D.976, F:R.978, F:D.982
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.7: 3 residues within 4Å:- Chain A: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.153, A:N.153
NAG.8: 2 residues within 4Å:- Chain A: W.627, N.650
No protein-ligand interaction detected (PLIP)NAG.12: 3 residues within 4Å:- Chain B: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.143, B:N.153
NAG.13: 3 residues within 4Å:- Chain B: W.627, N.650, D.682
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.682, B:D.682
NAG.18: 3 residues within 4Å:- Chain D: R.142, N.143, N.153
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.143, D:N.153, D:N.153
NAG.19: 4 residues within 4Å:- Chain D: W.627, L.648, N.650, D.682
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:W.627, D:D.682, D:D.682
NAG.22: 3 residues within 4Å:- Chain E: R.142, N.143, N.153
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.153, E:N.153
NAG.23: 5 residues within 4Å:- Chain E: W.627, L.648, N.650, P.681, D.682
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.682, E:D.682, E:D.682
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Javitt, G. et al., Helical self-assembly of a mucin segment suggests an evolutionary origin for von Willebrand factor tubules. Proc.Natl.Acad.Sci.USA (2022)
- Release Date
- 2022-02-16
- Peptides
- Mucin-2: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
G
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x CA: CALCIUM ION(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Javitt, G. et al., Helical self-assembly of a mucin segment suggests an evolutionary origin for von Willebrand factor tubules. Proc.Natl.Acad.Sci.USA (2022)
- Release Date
- 2022-02-16
- Peptides
- Mucin-2: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
G