SMTL ID : 7pp6.1

MUC2 Tubules of D1D2D3 domains

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain B: A.928, T.930, E.941, S.943, I.1131, H.1132, S.1133, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 8 residues within 4Å: Chain C: A.928, T.930, E.941, S.943, I.1131, H.1132, S.1133, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 8 residues within 4Å: Chain D: A.928, T.930, E.941, S.943, I.1131, H.1132, S.1133, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 8 residues within 4Å: Chain F: A.928, T.930, E.941, S.943, I.1131, H.1132, S.1133, N.1134 No protein-ligand interaction detected (PLIP)

12 x CA: CALCIUM ION(Non-covalent)

CA.5: 9 residues within 4Å: Chain A: D.383, N.510, F.511, N.512, G.513, L.514, E.515, D.517, D.518 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.383, A:L.514, A:D.518 CA.6: 7 residues within 4Å: Chain A: D.29, D.151, N.153, L.155, Y.158, S.159, E.160 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.155, A:E.160 CA.9: 8 residues within 4Å: Chain B: D.383, N.510, F.511, N.512, L.514, E.515, D.517, D.518 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.514, B:D.517, B:D.518 CA.10: 7 residues within 4Å: Chain B: D.852, N.974, D.976, R.978, S.979, N.981, D.982 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.852, B:R.978, B:D.982 CA.11: 7 residues within 4Å: Chain B: D.29, D.151, N.153, L.155, Y.158, S.159, E.160 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.29, B:D.151, B:L.155, B:E.160 CA.14: 8 residues within 4Å: Chain C: D.852, N.974, F.975, D.976, R.978, S.979, N.981, D.982 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.852, C:D.976, C:R.978, C:D.982 CA.15: 6 residues within 4Å: Chain D: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:L.514, D:D.517, D:D.518 CA.16: 7 residues within 4Å: Chain D: D.852, N.974, D.976, R.978, S.979, N.981, D.982 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.852, D:D.976, D:D.976, D:R.978, D:D.982 CA.17: 7 residues within 4Å: Chain D: D.29, D.151, N.153, L.155, Y.158, S.159, E.160 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.151, D:L.155, D:E.160 CA.20: 8 residues within 4Å: Chain E: D.383, N.510, F.511, N.512, G.513, L.514, D.517, D.518 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.383, E:L.514, E:D.517, E:D.518 CA.21: 7 residues within 4Å: Chain E: D.29, D.151, N.153, L.155, Y.158, S.159, E.160 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.29, E:L.155, E:E.160 CA.24: 7 residues within 4Å: Chain F: D.852, N.974, D.976, R.978, S.979, N.981, D.982 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.852, F:D.976, F:D.976, F:R.978, F:D.982

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.153, A:N.153 NAG.8: 2 residues within 4Å: Chain A: W.627, N.650 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain B: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.143, B:N.153 NAG.13: 3 residues within 4Å: Chain B: W.627, N.650, D.682 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.682, B:D.682 NAG.18: 3 residues within 4Å: Chain D: R.142, N.143, N.153 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.143, D:N.153, D:N.153 NAG.19: 4 residues within 4Å: Chain D: W.627, L.648, N.650, D.682 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:W.627, D:D.682, D:D.682 NAG.22: 3 residues within 4Å: Chain E: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.153, E:N.153 NAG.23: 5 residues within 4Å: Chain E: W.627, L.648, N.650, P.681, D.682 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.682, E:D.682, E:D.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javitt, G. et al., Helical self-assembly of a mucin segment suggests an evolutionary origin for von Willebrand factor tubules. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-02-16

Peptides

Mucin-2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
G

Mucin-2

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