- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x 7YX: N-[4-[(4R)-1-cyclopentyl-4-methyl-6-oxidanylidene-4,5-dihydropyridazin-3-yl]phenyl]-1,3-dihydropyrrolo[3,4-c]pyridine-2-carboxamide(Non-covalent)
7YX.3: 17 residues within 4Å:- Chain A: Y.189, H.192, F.194, R.197, D.220, Y.241, S.242, V.243, A.245, S.276, I.310, R.312, I.352, A.380
- Chain B: Y.19
- Ligands: PO4.1, EDO.4
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.189, A:Y.189, A:D.220, A:Y.241, A:V.243, A:I.310, A:I.352, A:A.380
- Hydrogen bonds: A:S.276
- Water bridges: A:H.192, A:D.220, A:S.242, A:R.312
- pi-Stacking: A:F.194, B:Y.19
7YX.8: 17 residues within 4Å:- Chain A: D.17, Y.19
- Chain B: Y.189, H.192, F.194, R.197, D.220, Y.241, S.242, V.243, A.245, S.276, I.310, R.312, I.352, A.380
- Ligands: EDO.6
14 PLIP interactions:13 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.189, B:Y.189, B:D.220, B:Y.241, B:V.243, B:I.310, B:I.352, B:A.380
- Hydrogen bonds: B:S.276
- Water bridges: B:D.220, B:D.220, B:R.312
- pi-Stacking: B:F.194, A:Y.19
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: F.194, R.197
- Chain B: R.393
- Ligands: PO4.1, 7YX.3
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:F.194, B:Y.19, B:R.393
- Water bridges: A:R.197, A:R.312, A:G.384, A:G.385
EDO.5: 4 residues within 4Å:- Chain A: F.124, V.125, R.435, N.480
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.125, A:R.435, A:N.480
EDO.6: 5 residues within 4Å:- Chain A: Y.19
- Chain B: E.247, H.248, R.312
- Ligands: 7YX.8
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:H.248, B:R.312, B:R.312
- Water bridges: B:R.197, B:S.249, A:Y.19, A:Y.19, A:E.150, A:K.401
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bohnke, N. et al., A Novel NAMPT Inhibitor-Based Antibody-Drug Conjugate Payload Class for Cancer Therapy. Bioconjug.Chem. (2022)
- Release Date
- 2022-06-15
- Peptides
- Nicotinamide phosphoribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x 7YX: N-[4-[(4R)-1-cyclopentyl-4-methyl-6-oxidanylidene-4,5-dihydropyridazin-3-yl]phenyl]-1,3-dihydropyrrolo[3,4-c]pyridine-2-carboxamide(Non-covalent)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bohnke, N. et al., A Novel NAMPT Inhibitor-Based Antibody-Drug Conjugate Payload Class for Cancer Therapy. Bioconjug.Chem. (2022)
- Release Date
- 2022-06-15
- Peptides
- Nicotinamide phosphoribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B