SMTL ID : 7pps.1

apo FabB from Pseudomonas aeruginosa with single point mutation C161A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.372, I.373, L.374, R.378 Ligand excluded by PLIP EDO.2: 7 residues within 4Å: Chain A: A.162, A.163, F.201, L.335, G.392, F.393 Ligands: CL.19 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: A.321, P.322, A.323, P.372, R.378 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: R.47, F.201, D.202, G.205, A.206, L.207, T.209 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: T.23, A.26, N.27, R.32 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: T.377, R.378, E.379 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: M.70, G.71, D.72, S.110, L.112, N.113, E.192 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: A.26, R.29 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: S.40, E.43, M.44, W.195 Ligands: EDO.26 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain B: R.47, F.201, D.202, G.205, A.206, L.207, T.209 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain B: K.252, I.253, Y.254, E.351 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain B: A.162, A.163, F.201, L.335, G.392, F.393 Ligands: CL.32, CL.33 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain B: Q.94, N.97, R.99, T.100, D.183, H.245 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain B: M.174, Q.178, I.257, V.258, G.259, T.287 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain A: M.44, W.195 Chain B: R.122 Ligands: EDO.9 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain B: K.217, R.220, N.360, D.362 Ligand excluded by PLIP EDO.28: 7 residues within 4Å: Chain B: M.70, G.71, D.72, S.110, L.112, N.113, E.192 Ligand excluded by PLIP EDO.29: 5 residues within 4Å: Chain B: D.293, I.355, R.378, A.381, K.382 Ligand excluded by PLIP

11 x IOD: IODIDE ION(Non-functional Binders)

IOD.10: 3 residues within 4Å: Chain A: D.289, A.290, K.403 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: T.214, P.215, E.216 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain A: K.127, R.128 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: V.304, G.305 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain A: N.38, P.39, S.40 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: R.375, E.376 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain A: E.363, L.364, R.375 Ligand excluded by PLIP IOD.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain A: R.311 Ligand excluded by PLIP IOD.30: 3 residues within 4Å: Chain B: D.289, A.290, K.403 Ligand excluded by PLIP IOD.31: 1 residues within 4Å: Chain B: T.209 Ligand excluded by PLIP

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.19: 5 residues within 4Å: Chain A: A.163, H.298, H.333, F.391 Ligands: EDO.2 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain A: S.273, G.274, E.275, R.311 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain B: A.163, H.298, H.333, F.391 Ligands: EDO.23 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain A: M.138 Chain B: G.107, A.162 Ligands: EDO.23 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain B: K.127 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain B: I.373, R.375, E.376 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadrykhins'ky, V. et al., Crystal structure of Pseudomonas aeruginosa FabB C161A, a template for structure-based design for new antibiotics. F1000Res (2021)

Release Date

2021-10-13

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 1