SMTL ID : 7pqk.1

Co-Crystal Structure of M. tuberculosis LeuRS in Complex with the Adduct Formed by Prodrug Cmpd1 with Adenosine-monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x 81D: (S)-3-(Aminomethyl)-4-chloro-7-(2-hydroxyethoxy)benzo[c][1,2]oxaborol-1(3H)-ol(Non-covalent)

81D.1: 19 residues within 4Å: Chain A: F.54, T.55, T.56, R.57, T.60, Y.149, V.150, L.151, Y.154, G.155, G.157, I.159, M.160, A.161, V.162, H.165, D.166, R.168, D.169 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.57, A:R.57, A:D.166 Hydrogen bonds: A:T.55, A:T.56, A:T.56, A:L.151, A:L.151, A:Y.154, A:M.160, A:R.168, A:R.168 Water bridges: A:Y.154, A:T.156, A:G.157

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: M.209, R.216, A.217, D.220 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffmann, G. et al., Adenosine-Dependent Activation Mechanism of Prodrugs Targeting an Aminoacyl-tRNA Synthetase. J.Am.Chem.Soc. (2023)

Release Date

2023-01-18

Peptides

Leucine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase