SMTL ID : 7pql.2 (1 other biounit)

Acinetobacter baumannii DNA gyrase B 23kDa ATPase subdomain complexed with EBL2704

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 80S: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-4-[(1S)-1-phenylethoxy]-1,3-benzothiazole-6-carboxylic acid(Non-covalent)

80S.1: 13 residues within 4Å: Chain A: N.33, E.37, D.60, R.63, G.64, I.65, P.66, I.81, V.107, R.123, T.152, V.154 Ligands: 81N.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.63, A:P.66, A:I.81 Hydrogen bonds: A:D.60 Water bridges: A:N.33, A:R.63, A:R.123, A:R.123, A:R.123, A:T.152 Salt bridges: A:R.63, A:R.123 pi-Cation interactions: A:R.63

1 x 81N: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-4-[(1R)-1-phenylethoxy]-1,3-benzothiazole-6-carboxylic acid(Non-covalent)

81N.2: 13 residues within 4Å: Chain A: N.33, E.37, D.60, R.63, G.64, I.65, P.66, I.81, V.107, R.123, T.152, V.154 Ligands: 80S.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.66, A:I.81, A:I.81 Hydrogen bonds: A:D.60 Water bridges: A:N.33, A:R.63, A:R.63, A:R.63, A:R.123, A:R.123, A:R.123 Salt bridges: A:R.63, A:R.123 pi-Cation interactions: A:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotman, A.E. et al., Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold-Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa. J.Med.Chem. (2023)

Release Date

2022-09-28

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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