SMTL ID : 7pr8.1

Crystal structure of human heparanase in complex with covalent inhibitor GR109

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.66 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x 8I4- NGY: 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose-(1-4)-(2R,3S,5R,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid(Post Translational Modification)
3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x CL: CHLORIDE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
de Boer, C. et al., Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo. Proc.Natl.Acad.Sci.USA (2022)
Release Date
2022-08-03
Peptides
Heparanase 50 kDa subunit: A
Heparanase 8 kDa subunit: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Heparanase 50 kDa subunit

Heparanase 8 kDa subunit

Related Entries With Identical Sequence

7pr7.1 | 7prt.1 | 7yi7.1 | 7yjc.1 | 8b0b.1 | 8b0c.1 | 8bac.1 | 8ohq.1 | 8ohr.1