SMTL ID : 7prv.1

The glucocorticoid receptor in complex with fluticasone furoate, a PGC1a coactivator fragment and sgk 23bp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.37, C.40, C.54, C.57, R.86 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.40, A:C.54, A:C.57 ZN.2: 4 residues within 4Å: Chain A: C.73, C.79, C.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.73, A:C.79, A:C.89, A:C.92 ZN.7: 4 residues within 4Å: Chain B: C.37, C.40, C.54, C.57 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.37, B:C.40, B:C.54, B:C.57 ZN.8: 4 residues within 4Å: Chain B: C.73, C.79, C.89, C.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.73, B:C.79, B:C.89, B:C.92

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: K.87, N.88 Chain B: K.87, P.90 Chain D: T.12, T.13 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.87, A:N.88 EDO.4: 8 residues within 4Å: Chain A: L.72, C.73, G.75, R.76, N.77, Y.229, R.230 Chain B: R.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.73 EDO.6: 9 residues within 4Å: Chain A: S.228, S.232, S.233, A.234, N.235, L.236, L.263, S.266, H.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.236, A:L.236, A:S.266 Water bridges: A:S.233

2 x GW6: (6alpha,11alpha,14beta,16alpha,17alpha)-6,9-difluoro-17-{[(fluoromethyl)sulfanyl]carbonyl}-11-hydroxy-16-methyl-3-oxoan drosta-1,4-dien-17-yl furan-2-carboxylate(Non-covalent)

GW6.5: 19 residues within 4Å: Chain A: M.176, L.179, N.180, G.183, Q.186, M.217, M.220, A.221, R.227, F.239, I.245, M.255, Q.258, M.262, L.348, Y.351, C.352, T.355, F.365 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.179, A:F.239, A:F.239, A:I.245, A:Q.258, A:L.348, A:L.348, A:Y.351 Hydrogen bonds: A:L.179, A:Q.186, A:R.227, A:Q.258, A:T.355 GW6.9: 20 residues within 4Å: Chain B: M.176, L.179, N.180, G.183, Q.186, M.217, M.220, A.221, R.227, F.239, I.245, M.255, Q.258, M.262, L.348, Y.351, C.352, T.355, I.363, F.365 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.179, B:M.220, B:F.239, B:I.245, B:L.348, B:L.348, B:Y.351 Hydrogen bonds: B:L.179, B:R.227, B:Q.258 Halogen bonds: B:N.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Postel, S. et al., Quaternary glucocorticoid receptor structure highlights allosteric interdomain communication. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-02-08

Peptides

Glucocorticoid receptor: AB
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
F

Glucocorticoid receptor

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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