SMTL ID : 7ps0.2 (1 other biounit)

Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with beta-24 Fabs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.20, G.21, N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.25

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain B: R.75 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.75 SO4.3: 3 residues within 4Å: Chain C: S.61, R.63, Q.81 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.61, C:Q.81 Salt bridges: C:R.63 SO4.4: 2 residues within 4Å: Chain C: K.153, Q.198 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.198 Salt bridges: C:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants. Cell Host Microbe (2022)

Release Date

2021-12-15

Peptides

Spike protein S1: A
Beta-24 heavy chain: B
Beta-24 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike protein S1

Beta-24 heavy chain

Beta-24 light chain

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