SMTL ID : 7ps3.1

Crystal structure of antibody Beta-32 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MLT: D-MALATE(Non-covalent)

MLT.1: 3 residues within 4Å: Chain A: S.55, G.56, R.72 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.72, A:R.72 Salt bridges: A:R.72 MLT.4: 5 residues within 4Å: Chain A: Y.33, W.50, N.52, S.55, G.57 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.33, A:N.52, A:S.55, A:G.57 Water bridges: A:Y.33

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: T.30, G.31, Y.32, Y.33, N.52, P.53, N.54, G.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.30, A:Y.32, A:N.54 Water bridges: A:Y.33, A:Y.33 GOL.3: 5 residues within 4Å: Chain A: V.2, G.26, Y.27, Y.32, R.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.32, A:R.98, A:R.98

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: Q.204, T.205 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: K.226 Chain B: S.121, D.122 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: Q.27, G.28 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants. Cell Host Microbe (2022)

Release Date

2021-12-15

Peptides

Beta-32 heavy chain: A
Beta-32 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Beta-32 heavy chain

Beta-32 light chain

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