SMTL ID : 7ps9.1 (2 other biounits)

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Iberdomide (CC-220)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.24, C.27, C.90, C.93 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.90, A:C.93

1 x 8W7: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione(Non-covalent)

8W7.2: 8 residues within 4Å: Chain A: N.50, P.51, F.77, S.78, W.79, W.85, W.99, Y.101 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.51, A:F.77, A:W.79, A:W.85, A:W.85, A:W.99 Hydrogen bonds: A:N.50, A:F.77, A:W.79, A:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heim, C. et al., High-resolution structures of the bound effectors avadomide (CC-122) and iberdomide (CC-220) highlight advantages and limitations of the MsCI4 soaking system. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-03-16

Peptides

Cereblon isoform 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cereblon isoform 4

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