SMTL ID : 7psl.1

S. cerevisiae Atm1 in MSP1D1 nanodiscs in nucleotide-free state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE(Non-covalent)

LOP.1: 10 residues within 4Å: Chain A: I.28, I.32, Q.36, F.39, S.149, F.150, S.153, V.154, I.158, Q.162 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.28, A:I.32, A:F.150, A:F.150, A:F.150, A:V.154 Hydrogen bonds: A:Q.162, A:Q.162 LOP.3: 10 residues within 4Å: Chain B: I.28, I.32, Q.36, F.39, S.149, F.150, S.153, V.154, I.158, Q.162 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.28, B:I.32, B:F.150, B:F.150, B:F.150, B:V.154 Hydrogen bonds: B:Q.162, B:Q.162

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: Y.354, I.360, S.380, G.381, S.385 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.381, A:G.383, A:S.385, A:S.385, A:S.385 PO4.4: 6 residues within 4Å: Chain B: Y.354, I.360, S.380, G.381, G.383, S.385 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.381, B:G.383, B:S.385, B:S.385, B:S.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellinghaus, T.L. et al., Conformational changes in the yeast mitochondrial ABC transporter Atm1 during the transport cycle. Sci Adv (2021)

Release Date

2021-12-29

Peptides

Iron-sulfur clusters transporter ATM1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Iron-sulfur clusters transporter ATM1, mitochondrial

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