SMTL ID : 7psp.1

Crystal structure of S100A4 labeled with NU000846b.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-dimer

Ligands

2 x 85Q: (2R,4R)-1-(2-chloranylethanoyl)-N-(3-chlorophenyl)-4-phenyl-pyrrolidine-2-carboxamide(Covalent)

85Q.1: 11 residues within 4Å: Chain A: C.104, M.108 Chain B: F.68, L.69, R.72, F.78, L.81, F.101, C.104, M.108 Ligands: 85Q.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.68, B:L.69, B:L.69, B:R.72, B:F.78, B:L.81, B:L.81, B:F.101 85Q.4: 10 residues within 4Å: Chain A: F.68, L.69, R.72, F.78, L.81, C.104, M.108 Chain B: C.104, M.108 Ligands: 85Q.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.68, A:F.68, A:L.69, A:R.72, A:F.78, A:F.78, A:L.81, A:L.81

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: S.43, E.46, D.48, K.51, E.56 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.43, A:E.46, A:D.48, A:K.51, H2O.1 CA.3: 6 residues within 4Å: Chain A: D.86, N.88, D.90, E.92, V.93, E.97 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.86, A:D.90, A:E.92, A:E.97, H2O.1 CA.5: 5 residues within 4Å: Chain B: S.43, E.46, D.48, K.51, E.56 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:S.43, B:E.46, B:D.48, B:K.51, B:E.56 CA.6: 7 residues within 4Å: Chain B: D.86, N.88, D.90, E.92, V.93, D.94, E.97 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.86, B:D.90, B:E.92, B:E.97, B:E.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giroud, C., Crystal structure of S100A4 labeled with NU000846b. To Be Published

Release Date

2022-10-05

Peptides

Protein S100-A4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein S100-A4

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