SMTL ID : 7ptf.2 (2 other biounits)

Pseudomonas aeruginosa DNA gyrase B 24kDa ATPase subdomain complexed with novobiocin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x NOV: NOVOBIOCIN(Non-covalent)

NOV.1: 15 residues within 4Å: Chain A: N.48, S.49, D.51, E.52, D.75, R.78, G.79, I.80, P.81, D.83, H.85, I.96, V.122, R.138, T.167 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:P.81, A:P.81, A:P.81, A:I.96, A:I.96 Hydrogen bonds: A:N.48, A:D.51, A:D.75, A:H.85, A:T.167 Water bridges: A:S.49, A:G.77, A:R.78, A:R.78, A:R.78, A:R.78, A:R.78, A:R.78, A:R.78 Salt bridges: A:R.78, A:R.138 pi-Cation interactions: A:R.78, A:R.78

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 6 residues within 4Å: Chain A: H.182, F.183, S.184, W.185, D.186, R.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.185, A:D.186 Salt bridges: A:R.210

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 4 residues within 4Å: Chain A: H.139, K.141, W.143, E.158 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.143, A:W.143 Hydrogen bonds: A:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotman, A.E. et al., Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold-Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa. J.Med.Chem. (2023)

Release Date

2022-10-05

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA gyrase subunit B

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