SMTL ID : 7ptm.2 (1 other biounit)

Crystal Structure of Two-Domain Laccase mutant M199G/R240H from Streptomyces griseoflavus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-trimer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.194, C.251, V.253, H.256, M.261 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.194, A:C.251, A:H.256 CU.2: 5 residues within 4Å: Chain A: H.197, H.199, H.250 Chain C: H.121 Ligands: OXY.4 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.121, A:H.199, A:H.250 CU.3: 6 residues within 4Å: Chain A: H.197, H.199 Chain C: H.65, H.67 Ligands: OXY.4, CU.12 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Metal complexes: C:H.65, A:H.197 CU.5: 6 residues within 4Å: Chain A: H.65, H.67, H.119 Chain B: H.252 Ligands: CU.6, OXY.7 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.67, A:H.119, B:H.252 CU.6: 6 residues within 4Å: Chain A: H.65, H.67 Chain B: H.197, H.199 Ligands: CU.5, OXY.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.197, A:H.65 CU.8: 4 residues within 4Å: Chain B: H.194, C.251, H.256, M.261 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.194, B:C.251, B:H.256 CU.9: 5 residues within 4Å: Chain A: H.121 Chain B: H.199, M.248, H.250 Ligands: OXY.7 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.121, B:H.199, B:H.250 CU.10: 6 residues within 4Å: Chain B: H.65, H.67, H.119 Chain C: H.197, H.252 Ligands: CU.11 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.252, B:H.67, B:H.119, H2O.15 CU.11: 5 residues within 4Å: Chain B: H.65, H.67 Chain C: H.197, H.199 Ligands: CU.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.65, C:H.197 CU.12: 7 residues within 4Å: Chain A: H.197, H.252 Chain C: H.65, H.67, H.119 Ligands: CU.3, OXY.4 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Metal complexes: C:H.67, C:H.119, A:H.252 CU.13: 4 residues within 4Å: Chain C: H.194, C.251, H.256, M.261 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.194, C:C.251, C:H.256 CU.14: 4 residues within 4Å: Chain B: H.121 Chain C: H.199, M.248, H.250 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.121, C:H.199, C:H.250, H2O.15

2 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.4: 10 residues within 4Å: Chain A: H.197, H.199, H.250, H.252 Chain C: H.65, H.119, H.121 Ligands: CU.2, CU.3, CU.12 No protein-ligand interaction detected (PLIP) OXY.7: 10 residues within 4Å: Chain A: H.65, H.119, H.121 Chain B: H.197, H.199, H.250, H.252 Ligands: CU.5, CU.6, CU.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolyadenko, I. et al., Engineering the Catalytic Properties of Two-Domain Laccase from Streptomyces griseoflavus Ac-993. Int J Mol Sci (2021)

Release Date

2022-01-19

Peptides

Two-domain laccase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Two-domain laccase

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