SMTL ID : 7ptv.1

Structure of the Mimivirus genomic fibre asymmetric unit

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: G.65, A.66, G.67, A.68, A.69, E.89, A.90, W.127, A.145, H.146, G.147, L.148, A.149, G.152, S.153, I.156, N.157, Q.158, N.160, A.313, V.315, C.349, S.350, G.351, S.627, H.628, D.655, L.656, N.666, T.667, W.668 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:I.156, A:N.157 Hydrogen bonds: A:A.66, A:A.66, A:A.68, A:A.69, A:G.147, A:S.153, A:N.157, A:Q.158, A:V.315, A:V.315, A:S.627, A:L.656, A:N.666, A:T.667, A:T.667, A:W.668 Salt bridges: A:H.146 pi-Cation interactions: A:H.628, A:H.628 FAD.2: 31 residues within 4Å: Chain B: G.65, A.66, G.67, A.68, A.69, E.89, A.90, W.127, A.145, H.146, G.147, L.148, A.149, G.152, S.153, I.156, N.157, Q.158, N.160, A.313, V.315, C.349, S.350, G.351, S.627, H.628, D.655, L.656, N.666, T.667, W.668 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:I.156, B:N.157 Hydrogen bonds: B:A.66, B:A.66, B:A.68, B:A.69, B:E.89, B:G.147, B:S.153, B:N.157, B:Q.158, B:V.315, B:V.315, B:S.627, B:L.656, B:N.666, B:T.667, B:W.668 Salt bridges: B:H.146 pi-Cation interactions: B:H.628, B:H.628

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Villalta, A. et al., The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield. Elife (2022)

Release Date

2022-08-10

Peptides

Putative glucose-methanol-choline oxidoreductase protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative glucose-methanol-choline oxidoreductase protein

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