SMTL ID : 7pu7.1

DNA polymerase from M. tuberculosis

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.73, H.107, C.158 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.73, A:H.107, A:C.158 ZN.2: 6 residues within 4Å: Chain A: H.14, H.16, H.48, E.73, D.226 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.14, A:H.16 ZN.3: 3 residues within 4Å: Chain A: D.23, H.48, H.228 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.23, A:H.48, A:H.228

1 x 82W: [(1~{S},3~{R},4~{R},5~{R},6~{R},7~{S},8~{R},11~{S},13~{S},16~{S},17~{R},18~{E})-13-methoxy-5,17,19-trimethyl-6-oxidanyl-16-[(1~{R})-1-oxidanylethyl]-14-oxidanylidene-2,15-dioxatetracyclo[9.8.0.0^{1,7}.0^{3,8}]nonadeca-9,18-dien-4-yl] 1~{H}-pyrrole-2-carboxylate(Non-covalent)

82W.4: 11 residues within 4Å: Chain A: R.382, Q.638, M.644, I.663, Y.666, F.783, H.787, Y.791 Chain B: G.5, A.6 Chain C: T.14 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.663, A:Y.666, A:F.783 Hydrogen bonds: A:Q.638, A:Q.638

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chengalroyen, M.D. et al., DNA-Dependent Binding of Nargenicin to DnaE1 Inhibits Replication in Mycobacterium tuberculosis. Acs Infect Dis. (2022)

Release Date

2022-02-23

Peptides

DNA polymerase III subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase III subunit alpha