SMTL ID : 7pw6.1

Human SMG1-8-9 kinase complex bound to a SMG1 inhibitor - SMG1 body

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 7 residues within 4Å: Chain A: R.668, K.669, K.724, Y.754, K.758, K.765, K.852 12 PLIP interactions: 12 interactions with chain A Salt bridges: A:R.668, A:K.669, A:K.669, A:K.669, A:K.724, A:K.724, A:K.758, A:K.758, A:K.765, A:K.765, A:K.852, A:K.852

1 x 88C: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea(Non-covalent)

88C.2: 15 residues within 4Å: Chain A: K.1390, D.1394, L.1395, D.1398, Y.1428, Q.1441, W.1442, V.1443, A.1446, P.1448, D.1574, L.1577, I.1588, D.1589, N.1591 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.1442, A:W.1442, A:P.1448, A:L.1577, A:I.1588, A:I.1588, A:I.1588 Hydrogen bonds: A:D.1398, A:V.1443, A:V.1443, A:N.1591

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langer, L.M. et al., Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8. Elife (2021)

Release Date

2021-12-01

Peptides

Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1,Serine/threonine-protein kinase SMG1