SMTL ID : 7pwy.1 (1 other biounit)

Structure of human dimeric ACMSD in complex with the inhibitor TES-1025

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.6, H.8, H.174, D.291 Ligands: 8EK.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.6, A:H.8, A:H.174, A:D.291, H2O.1 ZN.5: 5 residues within 4Å: Chain B: H.6, H.8, H.174, D.291 Ligands: 8EK.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.6, B:H.8, B:H.174, B:D.291

2 x 8EK: 2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid(Non-covalent)

8EK.2: 16 residues within 4Å: Chain A: H.8, F.46, R.47, V.76, P.77, V.78, H.174, W.176, M.180, W.188, W.191, M.195, D.291, F.294 Chain B: R.243 Ligands: ZN.1 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.76, A:P.77, A:V.78, A:W.176, A:W.176, A:W.191, A:F.294 Hydrogen bonds: A:R.47, B:R.243 Salt bridges: A:H.8, A:H.174 pi-Stacking: A:W.191 8EK.6: 15 residues within 4Å: Chain A: R.243 Chain B: H.8, F.46, R.47, V.76, P.77, V.78, H.174, W.176, W.188, W.191, M.195, D.291, F.294 Ligands: ZN.5 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.46, B:V.76, B:V.78, B:W.176, B:W.176, B:W.191, B:F.294 Salt bridges: B:H.6, B:H.8, B:H.174, B:H.224 Hydrogen bonds: A:R.243

4 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: P.139, K.168, S.170, L.328 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:P.139, A:K.168, A:S.170, A:L.328 K.4: 6 residues within 4Å: Chain A: L.288, E.298, G.302, K.303, L.304, I.305 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.298, H2O.2 K.7: 4 residues within 4Å: Chain B: P.139, K.168, S.170, L.328 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:P.139, B:K.168, B:S.170, B:L.328 K.8: 3 residues within 4Å: Chain B: V.147, N.148, W.150 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cianci, M. et al., Structural Basis of Human Dimeric alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde Decarboxylase Inhibition With TES-1025. Front Mol Biosci (2022)

Release Date

2022-04-20

Peptides

2-amino-3-carboxymuconate-6-semialdehyde decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-amino-3-carboxymuconate-6-semialdehyde decarboxylase

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