- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
MTE.3: 19 residues within 4Å:- Chain A: Q.111, C.150, G.778, G.779, Y.780, R.893, M.1004, G.1005, Q.1006, G.1044, G.1045, A.1046, V.1047, G.1048, S.1049, Q.1149, G.1216, E.1217
- Ligands: MOS.4
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:Q.111, A:G.779, A:Y.780, A:R.893, A:M.1004, A:Q.1006, A:A.1046, A:G.1048, A:S.1049, A:S.1049, A:Q.1149, A:Q.1149
- Water bridges: A:R.893
MTE.14: 22 residues within 4Å:- Chain B: Q.111, C.150, G.778, G.779, Y.780, G.781, R.893, M.1004, G.1005, Q.1006, M.1008, T.1043, G.1044, G.1045, A.1046, V.1047, G.1048, S.1049, Q.1149, G.1216, E.1217
- Ligands: MOS.15
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:Q.111, B:G.779, B:Y.780, B:R.893, B:M.1004, B:Q.1006, B:A.1046, B:G.1048, B:S.1049, B:Q.1149, B:Q.1149
- Water bridges: B:R.893, B:S.1049, B:G.1216
- 2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)
MOS.4: 11 residues within 4Å:- Chain A: Q.749, Y.780, G.781, P.891, C.892, R.893, P.895, G.1044, G.1045, E.1217
- Ligands: MTE.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.749, A:G.1045
MOS.15: 11 residues within 4Å:- Chain B: Q.749, Y.780, G.781, P.891, C.892, R.893, P.895, G.1044, G.1045, E.1217
- Ligands: MTE.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.749, B:G.1045
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.5: 32 residues within 4Å:- Chain A: E.44, G.45, L.73, M.238, L.239, V.240, A.241, G.242, N.243, T.244, A.245, V.248, N.284, L.287, I.316, A.317, V.321, A.324, G.325, T.326, A.328, G.329, N.330, S.332, I.333, F.340, S.342, D.343, I.381, I.382, K.401, W.1181
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:L.73, A:V.248, A:A.317, A:V.321, A:V.321, A:W.1181
- Hydrogen bonds: A:L.239, A:A.241, A:G.242, A:N.243, A:T.244, A:A.245, A:N.284, A:A.317, A:A.324, A:T.326, A:N.330, A:S.332, A:D.343, A:D.343, A:D.343, A:V.344, A:I.382, A:I.382, A:K.401
- Water bridges: A:Y.237, A:H.246
FAD.16: 32 residues within 4Å:- Chain B: E.44, G.45, M.238, L.239, V.240, A.241, G.242, N.243, T.244, A.245, V.248, N.284, I.316, A.317, V.321, A.324, G.325, T.326, A.328, G.329, N.330, S.332, I.333, F.340, S.342, D.343, I.381, I.382, K.401, N.408, W.1181
- Ligands: GOL.19
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:V.248, B:A.317, B:V.321, B:V.321
- Hydrogen bonds: B:L.239, B:A.241, B:G.242, B:N.243, B:T.244, B:T.244, B:A.245, B:N.284, B:A.317, B:A.324, B:T.326, B:N.330, B:S.332, B:D.343, B:D.343, B:V.344, B:I.382, B:I.382, B:K.401
- Water bridges: B:Y.237, B:H.246, B:N.414
- pi-Stacking: B:W.1181, B:W.1181
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 8 residues within 4Å:- Chain A: T.559, Y.560, S.561, D.563, L.564, Y.745, K.772, R.774
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.559, A:R.774, A:R.774
- Water bridges: A:D.563, A:R.774
GOL.7: 5 residues within 4Å:- Chain A: Y.249, F.340, P.341, R.1179, W.1181
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.249, A:R.1179
GOL.8: 4 residues within 4Å:- Chain A: F.575, I.577, S.813, S.817
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.817, A:S.817
- Water bridges: A:F.575, A:N.655, A:S.810, A:S.813
GOL.10: 4 residues within 4Å:- Chain A: E.948, A.951, E.952, A.955
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.948
GOL.11: 3 residues within 4Å:- Chain A: E.1257, H.1258, H.1262
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.1258, A:H.1262
- Water bridges: A:T.1255, A:E.1257
GOL.17: 8 residues within 4Å:- Chain B: T.559, Y.560, S.561, D.563, L.564, Y.745, K.772, R.774
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.559, B:R.774
- Water bridges: B:R.774, B:R.774
GOL.18: 6 residues within 4Å:- Chain B: D.22, L.75, N.243, H.246, R.251, S.652
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:D.22, B:N.243, B:H.246, B:R.251, B:R.251, B:S.652, B:S.652
- Water bridges: B:S.24, B:S.652
GOL.19: 4 residues within 4Å:- Chain B: S.332, I.333, A.336
- Ligands: FAD.16
2 PLIP interactions:2 interactions with chain B- Water bridges: B:S.252, B:A.336
GOL.20: 7 residues within 4Å:- Chain B: N.1205, K.1206, A.1207, G.1208, F.1209, M.1210, R.1211
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.1206, B:G.1208, B:R.1211, B:R.1211
GOL.21: 4 residues within 4Å:- Chain B: V.588, Y.602, D.604, K.606
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.588, B:Y.602, B:D.604
- Water bridges: B:T.590
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vilela-Alves, G. et al., Drosophila melanogaster's Aldehyde Oxidase 1: The First Invertebrate AOX structure. To Be Published
- Release Date
- 2022-11-16
- Peptides
- Aldehyde oxidase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
- 2 x MOS: DIOXOTHIOMOLYBDENUM(VI) ION(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vilela-Alves, G. et al., Drosophila melanogaster's Aldehyde Oxidase 1: The First Invertebrate AOX structure. To Be Published
- Release Date
- 2022-11-16
- Peptides
- Aldehyde oxidase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B