- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x 8H5: Verruculogen(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: Q.977, D.980, D.983, D.985
- Chain C: N.463
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:Q.977, A:D.980, A:D.983, A:D.985, A:D.985
CA.3: 5 residues within 4Å:- Chain A: D.381, R.528, G.548, E.550, Q.616
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.381, A:R.528, A:G.548, A:E.550, A:Q.616
CA.12: 5 residues within 4Å:- Chain B: Q.977, D.980, D.983, D.985
- Chain D: N.463
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:Q.977, B:D.980, B:D.983, B:D.985, B:D.985
CA.13: 5 residues within 4Å:- Chain B: D.381, R.528, G.548, E.550, Q.616
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.381, B:R.528, B:G.548, B:E.550, B:Q.616
CA.20: 5 residues within 4Å:- Chain B: N.463
- Chain C: Q.977, D.980, D.983, D.985
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:Q.977, C:D.980, C:D.983, C:D.985, C:D.985
CA.21: 5 residues within 4Å:- Chain C: D.381, R.528, G.548, E.550, Q.616
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.381, C:R.528, C:G.548, C:E.550, C:Q.616
CA.27: 5 residues within 4Å:- Chain A: N.463
- Chain D: Q.977, D.980, D.983, D.985
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:Q.977, D:D.980, D:D.983, D:D.985, D:D.985
CA.28: 5 residues within 4Å:- Chain D: D.381, R.528, G.548, E.550, Q.616
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.381, D:R.528, D:G.548, D:E.550, D:Q.616
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 6 residues within 4Å:- Chain A: N.523, A.526, R.528, T.547, M.549, E.550
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:N.523, A:A.526, A:T.547, A:M.549
MG.14: 6 residues within 4Å:- Chain B: N.523, A.526, R.528, T.547, M.549, E.550
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:N.523, B:A.526, B:T.547, B:M.549
MG.22: 6 residues within 4Å:- Chain C: N.523, A.526, R.528, T.547, M.549, E.550
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:N.523, C:A.526, C:T.547, C:M.549
MG.29: 6 residues within 4Å:- Chain D: N.523, A.526, R.528, T.547, M.549, E.550
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:N.523, D:A.526, D:T.547, D:M.549
- 8 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
6PL.5: 7 residues within 4Å:- Chain A: L.227, R.249, V.260, A.264, A.327, I.328, S.331
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.227, A:A.264, A:I.328
- Hydrogen bonds: A:R.249, A:S.331
6PL.15: 8 residues within 4Å:- Chain B: W.261, S.287, W.289, T.290
- Chain D: V.312, R.315, T.316, F.320
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain D- Hydrophobic interactions: B:W.261, B:W.261, B:W.289, B:W.289, D:R.315, D:T.316, D:F.320
- Hydrogen bonds: B:S.287, D:R.315
6PL.16: 7 residues within 4Å:- Chain B: L.227, R.249, V.260, A.264, A.327, I.328, S.331
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.227, B:A.264, B:I.328
- Hydrogen bonds: B:R.249, B:S.331
6PL.18: 8 residues within 4Å:- Chain A: W.261, S.287, W.289, T.290
- Chain C: V.312, R.315, T.316, V.319
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:V.312, C:R.315, C:T.316, C:V.319, C:V.319, A:W.261, A:W.261, A:W.289, A:W.289
- Salt bridges: C:R.315
- Hydrogen bonds: A:S.287
6PL.23: 7 residues within 4Å:- Chain B: R.315, T.316, V.319
- Chain C: W.261, S.287, W.289, T.290
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:R.315, B:V.319, B:V.319, C:W.261, C:W.261, C:W.289, C:W.289
- Salt bridges: B:R.315
- Hydrogen bonds: C:S.287
6PL.24: 7 residues within 4Å:- Chain C: L.227, R.249, V.260, A.264, A.327, I.328, S.331
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.227, C:A.264, C:I.328
- Hydrogen bonds: C:R.249, C:S.331
6PL.30: 9 residues within 4Å:- Chain A: V.312, R.315, T.316, V.319, F.320
- Chain D: W.261, S.287, W.289, T.290
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:R.315, A:V.319, A:F.320, D:W.261, D:W.261, D:W.289, D:W.289
- Hydrogen bonds: A:R.315, D:S.287
6PL.31: 7 residues within 4Å:- Chain D: L.227, R.249, V.260, A.264, A.327, I.328, S.331
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:L.227, D:A.264, D:I.328
- Hydrogen bonds: D:R.249, D:S.331
- 4 x CLR: CHOLESTEROL(Non-covalent)
CLR.6: 6 residues within 4Å:- Chain A: L.53, F.203, W.218, L.271, S.274, F.280
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.53, A:F.203, A:W.218, A:L.271
- Hydrogen bonds: A:S.274, A:S.274
CLR.17: 6 residues within 4Å:- Chain B: L.53, F.203, W.218, L.271, S.274, F.280
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.53, B:F.203, B:W.218, B:L.271
- Hydrogen bonds: B:S.274, B:S.274
CLR.25: 6 residues within 4Å:- Chain C: L.53, F.203, W.218, L.271, S.274, F.280
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:L.53, C:F.203, C:W.218, C:L.271
- Hydrogen bonds: C:S.274, C:S.274
CLR.32: 6 residues within 4Å:- Chain D: L.53, F.203, W.218, L.271, S.274, F.280
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:L.53, D:F.203, D:W.218, D:L.271
- Hydrogen bonds: D:S.274, D:S.274
- 4 x K: POTASSIUM ION(Non-covalent)
K.7: 9 residues within 4Å:- Chain A: G.303, Y.304
- Chain B: G.303, Y.304
- Chain C: G.303, Y.304
- Chain D: G.303, Y.304
- Ligands: K.8
4 PLIP interactions:1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B- Metal complexes: C:Y.304, D:G.303, A:G.303, B:G.303
K.8: 10 residues within 4Å:- Chain A: V.302, G.303
- Chain B: V.302, G.303
- Chain C: V.302, G.303
- Chain D: V.302, G.303
- Ligands: K.7, K.9
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Metal complexes: D:V.302, D:G.303, B:V.302, C:V.302, A:G.303
K.9: 10 residues within 4Å:- Chain A: T.301, V.302
- Chain B: T.301, V.302
- Chain C: T.301, V.302
- Chain D: T.301, V.302
- Ligands: K.8, K.10
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 2 interactions with chain D, 1 interactions with chain A- Metal complexes: B:V.302, C:V.302, D:T.301, D:V.302, A:T.301
K.10: 5 residues within 4Å:- Chain A: T.301
- Chain B: T.301
- Chain C: T.301
- Chain D: T.301
- Ligands: K.9
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Metal complexes: C:T.301, D:T.301
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Raisch, T. et al., Small molecule modulation of the Drosophila Slo channel elucidated by cryo-EM. Nat Commun (2021)
- Release Date
- 2021-12-15
- Peptides
- Isoform J of Calcium-activated potassium channel slowpoke: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x 8H5: Verruculogen(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
- 4 x CLR: CHOLESTEROL(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Raisch, T. et al., Small molecule modulation of the Drosophila Slo channel elucidated by cryo-EM. Nat Commun (2021)
- Release Date
- 2021-12-15
- Peptides
- Isoform J of Calcium-activated potassium channel slowpoke: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.