SMTL ID : 7pzi.1

HBc-F97L (premature secretion phenotype) in complex with Triton X-100

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.1: 14 residues within 4Å: Chain A: Y.6, A.58, L.65, N.92, M.93, L.95, K.96, L.97, Q.99, L.100 Chain B: Q.57, L.60, C.61, E.64 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:A.58, A:L.65, B:L.60, B:E.64, B:E.64 Hydrogen bonds: A:K.96, A:Q.99 TRT.2: 14 residues within 4Å: Chain A: L.60, C.61, E.64 Chain B: Y.6, V.13, C.61, L.65, N.92, M.93, L.95, K.96, L.97, Q.99, L.100 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.65, B:K.96, B:L.97, B:L.100, B:L.100, A:L.60, A:E.64 TRT.3: 13 residues within 4Å: Chain C: P.5, V.13, A.58, L.65, N.92, M.93, L.95, K.96, L.97, Q.99, L.100 Chain D: C.61, E.64 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:A.58, C:L.65, C:K.96, C:L.100, D:E.64 Hydrogen bonds: C:K.96 TRT.4: 13 residues within 4Å: Chain C: Q.57, L.60, C.61, E.64 Chain D: A.58, L.65, N.92, M.93, L.95, K.96, L.97, Q.99, L.100 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:A.58, D:L.65, C:L.60, C:E.64 Hydrogen bonds: D:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makbul, C. et al., Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97. Viruses (2021)

Release Date

2021-12-08

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Capsid protein

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