SMTL ID : 7pzl.1

HBc-F97L premature secretion phenotype

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.1: 15 residues within 4Å: Chain A: Y.6, V.13, A.58, C.61, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 Chain B: V.60, C.61 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.58, A:W.62, A:L.65, A:K.96, A:F.97, A:L.100, A:L.100, B:V.60 Hydrogen bonds: A:K.96, A:Q.99 TRT.2: 13 residues within 4Å: Chain A: V.60, C.61, E.64 Chain B: V.13, A.58, W.62, L.65, N.92, M.93, L.95, K.96, Q.99, L.100 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.58, B:W.62, B:L.65, A:E.64 Hydrogen bonds: B:K.96, B:Q.99 TRT.3: 15 residues within 4Å: Chain C: Y.6, V.13, A.58, C.61, W.62, L.65, N.92, M.93, K.96, F.97, Q.99, L.100 Chain D: V.60, C.61, E.64 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:A.58, C:W.62, C:L.65, C:M.93, C:K.96, C:L.100, D:V.60, D:E.64 Hydrogen bonds: C:K.96 TRT.4: 14 residues within 4Å: Chain C: V.60, C.61, E.64 Chain D: V.13, A.58, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:A.58, D:W.62, D:L.65, D:F.97, C:E.64 Hydrogen bonds: D:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makbul, C. et al., Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97. Viruses (2021)

Release Date

2021-12-08

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein

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