SMTL ID : 7pzm.1

HBc-P5T in complex with X-100

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.1: 15 residues within 4Å: Chain A: T.5, Y.6, V.13, A.58, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 Chain B: Q.57, C.61 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.58, A:W.62, A:F.97, A:L.100 Hydrogen bonds: A:K.96 TRT.2: 17 residues within 4Å: Chain A: Q.57, L.60, C.61, E.64 Chain B: T.5, Y.6, V.13, C.61, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.62, B:K.96, B:F.97, B:L.100, B:L.100, A:E.64 Hydrogen bonds: B:Q.99 TRT.3: 15 residues within 4Å: Chain C: T.5, V.13, A.58, C.61, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 Chain D: C.61, E.64 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:A.58, C:W.62, C:L.65, C:F.97, C:F.97, C:L.100, D:E.64 Hydrogen bonds: C:K.96 TRT.4: 16 residues within 4Å: Chain C: Q.57, L.60, C.61, E.64 Chain D: T.5, Y.6, V.13, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:E.64, D:W.62, D:F.97, D:L.100 Hydrogen bonds: D:K.96, D:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makbul, C. et al., Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97. Viruses (2021)

Release Date

2021-12-08

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Capsid protein

Related Entries With Identical Sequence