SMTL ID : 7pzo.1

mite allergen Der p 3 from Dermatophagoides pteronyssinus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.6, P.136, S.137, E.138, R.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.137, A:E.138, A:E.138 Salt bridges: A:K.6, A:R.140 SO4.2: 2 residues within 4Å: Chain A: R.53, K.65 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.53, A:K.65 SO4.3: 5 residues within 4Å: Chain B: K.6, P.136, S.137, E.138, R.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.137, B:E.138 Salt bridges: B:K.6, B:R.140 SO4.4: 2 residues within 4Å: Chain B: R.53, K.65 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold. J.Biomol.Struct.Dyn. (2018)

Release Date

2022-11-02

Peptides

mite allergen Der p 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mite allergen Der p 3