SMTL ID : 7q13.1

Human GYS1-GYG1 complex activated state bound to glucose-6-phosphate, uridine diphosphate, and glucose

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x G6P: 6-O-phosphono-alpha-D-glucopyranose(Non-covalent)

G6P.1: 11 residues within 4Å: Chain A: Q.294, H.297, A.298, K.301, H.501, R.579, R.582, R.586 Chain G: A.289, H.291, E.292 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain G Hydrogen bonds: A:Q.294, A:Q.294, G:E.292, G:E.292 Salt bridges: A:H.297, A:H.297, A:K.301, A:H.501, A:R.579, A:R.582, A:R.586, A:R.586 G6P.4: 11 residues within 4Å: Chain F: Q.294, H.297, A.298, K.301, H.501, R.579, R.582, R.586 Chain H: A.289, H.291, E.292 11 PLIP interactions: 1 interactions with chain H, 10 interactions with chain F Hydrogen bonds: H:E.292, F:Q.294, F:Q.294 Salt bridges: F:H.297, F:H.297, F:K.301, F:H.501, F:R.579, F:R.582, F:R.586, F:R.586 G6P.7: 11 residues within 4Å: Chain A: A.289, H.291, E.292 Chain G: Q.294, H.297, A.298, K.301, H.501, R.579, R.582, R.586 11 PLIP interactions: 10 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:Q.294, G:Q.294, A:E.292 Salt bridges: G:H.297, G:H.297, G:K.301, G:H.501, G:R.579, G:R.582, G:R.586, G:R.586 G6P.10: 11 residues within 4Å: Chain F: A.289, H.291, E.292 Chain H: Q.294, H.297, A.298, K.301, H.501, R.579, R.582, R.586 12 PLIP interactions: 10 interactions with chain H, 2 interactions with chain F Hydrogen bonds: H:Q.294, H:Q.294, F:E.292, F:E.292 Salt bridges: H:H.297, H:H.297, H:K.301, H:H.501, H:R.579, H:R.582, H:R.586, H:R.586

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 18 residues within 4Å: Chain A: K.39, G.41, G.42, T.45, R.211, A.329, G.330, R.331, K.337, I.367, F.481, L.482, Y.493, G.513, Y.514, T.515, E.518 Ligands: GLC.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.329, A:F.481 Hydrogen bonds: A:K.39, A:R.211, A:R.331, A:L.482, A:Y.514, A:T.515, A:E.518 Salt bridges: A:R.331, A:K.337, A:K.337 pi-Stacking: A:Y.493 UDP.5: 18 residues within 4Å: Chain F: K.39, G.41, G.42, T.45, R.211, A.329, G.330, R.331, K.337, I.367, F.481, L.482, Y.493, G.513, Y.514, T.515, E.518 Ligands: GLC.6 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:A.329, F:F.481 Hydrogen bonds: F:K.39, F:T.45, F:R.211, F:R.331, F:L.482, F:Y.514, F:T.515, F:E.518 Salt bridges: F:R.331, F:K.337, F:K.337 pi-Stacking: F:Y.493 UDP.8: 18 residues within 4Å: Chain G: K.39, G.41, G.42, T.45, R.211, A.329, G.330, R.331, K.337, I.367, F.481, L.482, Y.493, G.513, Y.514, T.515, E.518 Ligands: GLC.9 14 PLIP interactions: 14 interactions with chain G Hydrophobic interactions: G:A.329, G:F.481 Hydrogen bonds: G:K.39, G:T.45, G:R.211, G:R.331, G:L.482, G:Y.514, G:T.515, G:E.518 Salt bridges: G:R.331, G:K.337, G:K.337 pi-Stacking: G:Y.493 UDP.11: 18 residues within 4Å: Chain H: K.39, G.41, G.42, T.45, R.211, A.329, G.330, R.331, K.337, I.367, F.481, L.482, Y.493, G.513, Y.514, T.515, E.518 Ligands: GLC.12 13 PLIP interactions: 13 interactions with chain H Hydrophobic interactions: H:A.329, H:F.481 Hydrogen bonds: H:K.39, H:R.211, H:R.331, H:L.482, H:Y.514, H:T.515, H:E.518 Salt bridges: H:R.331, H:K.337, H:K.337 pi-Stacking: H:Y.493

4 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.3: 13 residues within 4Å: Chain A: G.42, E.181, H.205, R.211, V.258, N.280, R.331, E.510, P.511, W.512, G.513, Y.514 Ligands: UDP.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.181, A:E.181, A:R.211, A:R.331, A:E.510, A:W.512, A:G.513 GLC.6: 13 residues within 4Å: Chain F: G.42, E.181, H.205, R.211, V.258, N.280, R.331, E.510, P.511, W.512, G.513, Y.514 Ligands: UDP.5 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:E.181, F:R.211, F:R.331, F:E.510, F:E.510, F:W.512, F:G.513 GLC.9: 13 residues within 4Å: Chain G: G.42, E.181, H.205, R.211, V.258, N.280, R.331, E.510, P.511, W.512, G.513, Y.514 Ligands: UDP.8 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:E.181, G:R.211, G:R.331, G:E.510, G:E.510, G:W.512, G:G.513 GLC.12: 13 residues within 4Å: Chain H: G.42, E.181, H.205, R.211, V.258, N.280, R.331, E.510, P.511, W.512, G.513, Y.514 Ligands: UDP.11 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:E.181, H:E.181, H:R.211, H:R.331, H:E.510, H:W.512, H:G.513

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCorvie, T.J. et al., Molecular basis for the regulation of human glycogen synthase by phosphorylation and glucose-6-phosphate. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-27

Peptides

Glycogen [starch] synthase, muscle: AFGH
Glycogenin-1: BCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

G
C

H
D

B
E

C
F

D
G

E
H

Glycogen [starch] synthase, muscle

Glycogenin-1

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