- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x FLC: CITRATE ANION(Non-covalent)
FLC.2: 11 residues within 4Å:- Chain A: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Chain B: R.45
- Ligands: GOL.3
17 PLIP interactions:14 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.23, A:D.24, A:R.88, A:R.88, A:I.89, A:T.91, A:M.194, A:E.195, A:E.195
- Water bridges: A:R.27, B:R.45
- Salt bridges: A:R.27, A:R.27, A:R.88, A:R.88, B:R.45, B:R.45
FLC.6: 12 residues within 4Å:- Chain A: R.45
- Chain B: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Ligands: GOL.5, GOL.7
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:G.23, B:R.88, B:R.88, B:T.91, B:T.91, B:M.194, B:E.195
- Water bridges: B:D.24, B:D.24
- Salt bridges: B:R.27, B:R.27, B:R.88, B:R.88, A:R.45, A:R.45
FLC.9: 11 residues within 4Å:- Chain C: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Chain D: R.45
- Ligands: GOL.10
17 PLIP interactions:14 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:G.23, C:D.24, C:R.88, C:R.88, C:I.89, C:T.91, C:M.194, C:E.195, C:E.195
- Water bridges: C:R.27, D:R.45
- Salt bridges: C:R.27, C:R.27, C:R.88, C:R.88, D:R.45, D:R.45
FLC.13: 12 residues within 4Å:- Chain C: R.45
- Chain D: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Ligands: GOL.12, GOL.14
15 PLIP interactions:13 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:G.23, D:R.88, D:R.88, D:T.91, D:T.91, D:M.194, D:E.195
- Water bridges: D:D.24, D:D.24
- Salt bridges: D:R.27, D:R.27, D:R.88, D:R.88, C:R.45, C:R.45
FLC.16: 11 residues within 4Å:- Chain E: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Chain F: R.45
- Ligands: GOL.17
17 PLIP interactions:14 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:G.23, E:D.24, E:R.88, E:R.88, E:I.89, E:T.91, E:M.194, E:E.195, E:E.195
- Water bridges: E:R.27, F:R.45
- Salt bridges: E:R.27, E:R.27, E:R.88, E:R.88, F:R.45, F:R.45
FLC.20: 12 residues within 4Å:- Chain E: R.45
- Chain F: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195
- Ligands: GOL.19, GOL.21
15 PLIP interactions:13 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:G.23, F:R.88, F:R.88, F:T.91, F:T.91, F:M.194, F:E.195
- Water bridges: F:D.24, F:D.24
- Salt bridges: F:R.27, F:R.27, F:R.88, F:R.88, E:R.45, E:R.45
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 9 residues within 4Å:- Chain A: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: FLC.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.92, A:G.93, A:Q.163, A:Q.163
- Water bridges: A:R.88, A:T.91
GOL.4: 7 residues within 4Å:- Chain A: R.112, L.113, L.118, L.123, F.177
- Chain B: L.118
- Chain D: E.124
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.114, A:H.176
GOL.5: 6 residues within 4Å:- Chain A: F.4, H.5, R.45
- Chain B: F.159
- Ligands: FLC.6, GOL.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.45, A:R.45
GOL.7: 10 residues within 4Å:- Chain B: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: GOL.5, FLC.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.93, B:Q.163
- Water bridges: B:R.88, B:T.91
GOL.10: 9 residues within 4Å:- Chain C: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: FLC.9
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.92, C:G.93, C:Q.163, C:Q.163
- Water bridges: C:R.88, C:T.91
GOL.11: 7 residues within 4Å:- Chain C: R.112, L.113, L.118, L.123, F.177
- Chain D: L.118
- Chain F: E.124
2 PLIP interactions:2 interactions with chain C- Water bridges: C:D.114, C:H.176
GOL.12: 6 residues within 4Å:- Chain C: F.4, H.5, R.45
- Chain D: F.159
- Ligands: FLC.13, GOL.14
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.45, C:R.45
GOL.14: 10 residues within 4Å:- Chain D: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: GOL.12, FLC.13
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.93, D:Q.163
- Water bridges: D:R.88, D:T.91
GOL.17: 9 residues within 4Å:- Chain E: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: FLC.16
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:T.92, E:G.93, E:Q.163, E:Q.163
- Water bridges: E:R.88, E:T.91
GOL.18: 7 residues within 4Å:- Chain B: E.124
- Chain E: R.112, L.113, L.118, L.123, F.177
- Chain F: L.118
2 PLIP interactions:2 interactions with chain E- Water bridges: E:D.114, E:H.176
GOL.19: 6 residues within 4Å:- Chain E: F.4, H.5, R.45
- Chain F: F.159
- Ligands: FLC.20, GOL.21
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.45, E:R.45
GOL.21: 10 residues within 4Å:- Chain F: T.91, T.92, G.93, F.159, Q.163, Y.192, E.193, M.194
- Ligands: GOL.19, FLC.20
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.93, F:Q.163
- Water bridges: F:R.88, F:T.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Polyakov, K. et al., Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence glycerol. To Be Published
- Release Date
- 2022-04-06
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
AAAD
BBBE
AAAF
BBB
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x K: POTASSIUM ION(Non-covalent)
- 6 x FLC: CITRATE ANION(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Polyakov, K. et al., Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence glycerol. To Be Published
- Release Date
- 2022-04-06
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
AAAD
BBBE
AAAF
BBB