SMTL ID : 7q1j.1

Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence PEG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-hexamer

Ligands

3 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: E.46, I.66, S.70 Chain B: E.46, I.66, S.70 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Metal complexes: A:E.46, A:I.66, B:E.46, B:I.66, B:S.70 K.4: 6 residues within 4Å: Chain C: E.46, I.66, S.70 Chain D: E.46, I.66, S.70 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Metal complexes: C:E.46, C:I.66, D:E.46, D:I.66, D:S.70 K.7: 6 residues within 4Å: Chain E: E.46, I.66, S.70 Chain F: E.46, I.66, S.70 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain E Metal complexes: F:E.46, F:I.66, F:S.70, E:E.46, E:I.66

6 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 10 residues within 4Å: Chain A: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain B: R.45 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.23, A:D.24, A:R.88, A:R.88, A:I.89, A:T.91, A:E.193, A:M.194, A:E.195, A:E.195 Water bridges: A:R.27, A:I.89 Salt bridges: A:R.27, A:R.27, A:R.88, A:R.88, B:R.45 FLC.3: 10 residues within 4Å: Chain A: R.45 Chain B: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.23, B:D.24, B:R.88, B:R.88, B:T.91, B:T.91, B:M.194 Water bridges: B:R.27, B:R.27 Salt bridges: B:R.27, B:R.27, B:R.88, B:R.88, A:R.45 FLC.5: 10 residues within 4Å: Chain C: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain D: R.45 17 PLIP interactions: 1 interactions with chain D, 16 interactions with chain C Salt bridges: D:R.45, C:R.27, C:R.27, C:R.88, C:R.88 Hydrogen bonds: C:G.23, C:D.24, C:R.88, C:R.88, C:I.89, C:T.91, C:E.193, C:M.194, C:E.195, C:E.195 Water bridges: C:R.27, C:I.89 FLC.6: 10 residues within 4Å: Chain C: R.45 Chain D: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.23, D:D.24, D:R.88, D:R.88, D:T.91, D:T.91, D:M.194 Water bridges: D:R.27, D:R.27 Salt bridges: D:R.27, D:R.27, D:R.88, D:R.88, C:R.45 FLC.8: 10 residues within 4Å: Chain E: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain F: R.45 17 PLIP interactions: 1 interactions with chain F, 16 interactions with chain E Salt bridges: F:R.45, E:R.27, E:R.27, E:R.88, E:R.88 Hydrogen bonds: E:G.23, E:D.24, E:R.88, E:R.88, E:I.89, E:T.91, E:E.193, E:M.194, E:E.195, E:E.195 Water bridges: E:R.27, E:I.89 FLC.9: 10 residues within 4Å: Chain E: R.45 Chain F: G.23, D.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 14 PLIP interactions: 13 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.23, F:D.24, F:R.88, F:R.88, F:T.91, F:T.91, F:M.194 Water bridges: F:R.27, F:R.27 Salt bridges: F:R.27, F:R.27, F:R.88, F:R.88, E:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polyakov, K. et al., Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence PEG. To Be Published

Release Date

2022-04-06

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
AAA

D
BBB

E
AAA

F
BBB

Uridine phosphorylase

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