SMTL ID : 7q2f.1

mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT585

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Y.198, M.203, G.207, E.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.206 Water bridges: A:A.204

2 x 6RQ: 5,6-dimethyl-1~{H}-benzimidazol-2-amine(Non-covalent)

6RQ.2: 10 residues within 4Å: Chain A: E.166, H.167, S.195, I.221, F.226, G.229, L.231, Y.291, C.295, F.299 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.166, A:I.221, A:F.226, A:F.226, A:L.231 Hydrogen bonds: A:S.195, A:Y.291 Water bridges: A:Y.258 pi-Stacking: A:F.226 6RQ.3: 5 residues within 4Å: Chain A: F.220, E.224, N.286, R.287, K.290 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.286, A:K.290 Salt bridges: A:E.224 pi-Stacking: A:F.220 pi-Cation interactions: A:K.290

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 9 residues within 4Å: Chain A: I.97, G.98, L.119, T.120, L.121, Q.147, G.148, W.149, A.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.149 DMS.5: 4 residues within 4Å: Chain A: S.197, Y.198, H.199, M.236 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galy, R. et al., Fragment-Based Ligand Discovery Applied to the Mycolic Acid Methyltransferase Hma (MmaA4) from Mycobacterium tuberculosis : A Crystallographic and Molecular Modelling Study. Pharmaceuticals (2021)

Release Date

2022-02-02

Peptides

Hydroxymycolate synthase MmaA4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxymycolate synthase MmaA4

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