SMTL ID : 7q32.1

Mutant D24G of uridine phosphorylase from E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

6 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 10 residues within 4Å: Chain A: G.23, G.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain B: R.45 17 PLIP interactions: 13 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.23, A:G.24, A:R.88, A:R.88, A:T.91, A:M.194, A:E.195 Water bridges: A:R.27, A:R.27, B:R.45, B:R.45 Salt bridges: A:R.27, A:R.27, A:R.88, A:R.88, B:R.45, B:R.45 FLC.3: 9 residues within 4Å: Chain A: R.45 Chain B: G.23, R.27, R.88, G.90, T.91, E.193, M.194, E.195 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.23, B:R.88, B:R.88, B:T.91, B:T.91, B:M.194, B:E.195 Water bridges: B:G.24, B:G.24, B:R.27, B:R.27, B:T.91, A:R.45 Salt bridges: B:R.27, B:R.27, B:R.88, B:R.88, A:R.45, A:R.45 FLC.4: 10 residues within 4Å: Chain C: G.23, G.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain D: R.45 17 PLIP interactions: 13 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:G.23, C:G.24, C:R.88, C:R.88, C:T.91, C:M.194, C:E.195 Water bridges: C:R.27, C:R.27, D:R.45, D:R.45 Salt bridges: C:R.27, C:R.27, C:R.88, C:R.88, D:R.45, D:R.45 FLC.6: 9 residues within 4Å: Chain C: R.45 Chain D: G.23, R.27, R.88, G.90, T.91, E.193, M.194, E.195 19 PLIP interactions: 3 interactions with chain C, 16 interactions with chain D Water bridges: C:R.45, D:G.24, D:G.24, D:R.27, D:R.27, D:T.91 Salt bridges: C:R.45, C:R.45, D:R.27, D:R.27, D:R.88, D:R.88 Hydrogen bonds: D:G.23, D:R.88, D:R.88, D:T.91, D:T.91, D:M.194, D:E.195 FLC.7: 10 residues within 4Å: Chain E: G.23, G.24, R.27, R.88, G.90, T.91, E.193, M.194, E.195 Chain F: R.45 17 PLIP interactions: 13 interactions with chain E, 4 interactions with chain F Hydrogen bonds: E:G.23, E:G.24, E:R.88, E:R.88, E:T.91, E:M.194, E:E.195 Water bridges: E:R.27, E:R.27, F:R.45, F:R.45 Salt bridges: E:R.27, E:R.27, E:R.88, E:R.88, F:R.45, F:R.45 FLC.9: 9 residues within 4Å: Chain E: R.45 Chain F: G.23, R.27, R.88, G.90, T.91, E.193, M.194, E.195 19 PLIP interactions: 16 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:G.23, F:R.88, F:R.88, F:T.91, F:T.91, F:M.194, F:E.195 Water bridges: F:G.24, F:G.24, F:R.27, F:R.27, F:T.91, E:R.45 Salt bridges: F:R.27, F:R.27, F:R.88, F:R.88, E:R.45, E:R.45

3 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: E.46, I.66, S.70 Chain B: E.46, I.66, S.70 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.46, B:I.66, B:S.70, A:E.46, A:I.66 K.5: 6 residues within 4Å: Chain C: E.46, I.66, S.70 Chain D: E.46, I.66, S.70 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain C Metal complexes: D:E.46, D:I.66, D:S.70, C:E.46, C:I.66 K.8: 6 residues within 4Å: Chain E: E.46, I.66, S.70 Chain F: E.46, I.66, S.70 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain E Metal complexes: F:E.46, F:I.66, F:S.70, E:E.46, E:I.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polyakov, K. et al., Mutant D24G of uridine phosphorylase from E. coli. To Be Published

Release Date

2022-05-04

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
AAA

D
BBB

E
AAA

F
BBB

Uridine phosphorylase

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