SMTL ID : 7q3x.1

Crystal structure of Malate dehydrogenase from Haloarcula marismortui with Potassium and Chloride ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

28 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: K.185, W.278, D.279 Chain D: T.191, D.192 Ligands: K.9 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: L.147, R.151, I.215, T.221 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.294, Q.298 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Y.130, S.136, R.137 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.61, Q.62 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: R.153, G.169, T.170, P.245 Chain B: Y.54 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain A: V.243, W.278 Chain D: D.189, G.190 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain B: K.185, D.279 Chain C: T.191, D.192 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain B: L.147, R.151, I.215, T.221 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: R.88, K.294, Q.298 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain B: R.61, Q.62 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain A: Y.54 Chain B: R.153, T.170, P.245 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain B: V.243, W.278 Chain C: G.190 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain B: D.189, G.190 Chain C: V.243, W.278 Ligand excluded by PLIP CL.26: 4 residues within 4Å: Chain B: T.191, D.192 Chain C: K.185, D.279 Ligand excluded by PLIP CL.27: 4 residues within 4Å: Chain C: L.147, R.151, I.215, T.221 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain C: R.82, R.88, L.91 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain C: R.88, K.294, Q.298 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain C: Y.130, S.136, R.137 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain C: R.61, Q.62 Ligand excluded by PLIP CL.32: 5 residues within 4Å: Chain C: R.153, G.169, T.170, P.245 Chain D: Y.54 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain A: D.189, G.190 Chain D: V.243, W.278 Ligand excluded by PLIP CL.41: 5 residues within 4Å: Chain A: T.191, D.192 Chain D: K.185, W.278, D.279 Ligand excluded by PLIP CL.42: 4 residues within 4Å: Chain D: L.147, R.151, I.215, T.221 Ligand excluded by PLIP CL.43: 3 residues within 4Å: Chain D: R.88, K.294, Q.298 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain D: Y.130, S.136, R.137 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain D: R.61, Q.62 Ligand excluded by PLIP CL.46: 5 residues within 4Å: Chain C: Y.54 Chain D: R.153, G.169, T.170, P.245 Ligand excluded by PLIP

21 x K: POTASSIUM ION(Non-covalent)

K.7: 1 residues within 4Å: Chain A: S.184 Ligand excluded by PLIP K.8: 2 residues within 4Å: Chain A: D.239 Chain C: D.27 Ligand excluded by PLIP K.9: 3 residues within 4Å: Chain A: D.279 Chain D: D.192 Ligands: CL.1 Ligand excluded by PLIP K.10: 1 residues within 4Å: Chain A: G.85 Ligand excluded by PLIP K.11: 4 residues within 4Å: Chain A: D.24, A.26, D.27 Ligands: K.34 Ligand excluded by PLIP K.12: 3 residues within 4Å: Chain A: Y.130, E.131, G.133 Ligand excluded by PLIP K.13: 2 residues within 4Å: Chain A: S.71, D.112 Ligand excluded by PLIP K.14: 2 residues within 4Å: Chain A: E.222 Chain B: E.222 Ligand excluded by PLIP K.21: 1 residues within 4Å: Chain B: S.184 Ligand excluded by PLIP K.22: 2 residues within 4Å: Chain B: D.239 Chain D: D.27 Ligand excluded by PLIP K.23: 3 residues within 4Å: Chain B: Y.130, E.131, G.133 Ligand excluded by PLIP K.33: 1 residues within 4Å: Chain C: S.184 Ligand excluded by PLIP K.34: 3 residues within 4Å: Chain A: D.27 Chain C: D.239 Ligands: K.11 Ligand excluded by PLIP K.35: 1 residues within 4Å: Chain C: G.85 Ligand excluded by PLIP K.36: 4 residues within 4Å: Chain C: D.24, I.25, A.26, D.27 Ligand excluded by PLIP K.37: 2 residues within 4Å: Chain C: D.55 Chain D: Q.165 Ligand excluded by PLIP K.38: 3 residues within 4Å: Chain C: Y.130, E.131, G.133 Ligand excluded by PLIP K.39: 2 residues within 4Å: Chain C: E.222 Chain D: E.222 Ligand excluded by PLIP K.47: 1 residues within 4Å: Chain D: S.184 Ligand excluded by PLIP K.48: 2 residues within 4Å: Chain B: D.27 Chain D: D.239 Ligand excluded by PLIP K.49: 3 residues within 4Å: Chain D: D.107, N.110, D.111 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Girard, E. et al., Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Haloarchaeal Proteins. To Be Published

Release Date

2022-02-16

Peptides

Malate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Malate dehydrogenase

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