SMTL ID : 7q4h.1

A thermostable lipase from Thermoanaerobacter thermohydrosulfuricus in complex with PMSF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: M.17, K.41 Chain B: M.17, K.41 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: G.36, F.37, G.39, E.43, S.113, H.233, T.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.37, A:F.37 Water bridges: A:N.40, A:E.43 GOL.3: 3 residues within 4Å: Chain A: S.44, H.45, K.236 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.44, A:H.45 Water bridges: B:T.38, B:T.38 GOL.4: 2 residues within 4Å: Chain A: Q.91, K.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.91, A:K.94 GOL.8: 9 residues within 4Å: Chain B: G.36, F.37, G.39, E.43, S.44, L.112, S.113, H.233, T.234 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.36, B:G.36, B:F.37, B:S.44, B:H.233 Water bridges: B:T.38, B:N.40

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.124, K.127 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.124, A:K.127 SO4.6: 2 residues within 4Å: Chain A: N.10, K.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.10 SO4.9: 3 residues within 4Å: Chain B: S.44, H.45, K.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.45

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.7: 11 residues within 4Å: Chain A: K.236, S.237, W.240 Chain B: F.37, S.113, E.149, Y.154, D.165, I.166, G.167, E.204 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinotsis, N. et al., Discovery of a non-canonical prototype long-chain monoacylglycerol lipase through a structure-based endogenous reaction intermediate complex. Nat Commun (2023)

Release Date

2023-05-10

Peptides

Hydrolase_4 domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydrolase_4 domain-containing protein

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