SMTL ID : 7q50.1

human Gid4 bound to a Phe/N-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

monomer

Ligands

1 x PHE- ASP- VAL- SER- TRP- PHE- MET: FDVSWFMG peptide(Non-covalent)

PHE-ASP-VAL-SER-TRP-PHE-MET.1: 13 residues within 4Å: Chain A: Q.12, S.14, Y.19, I.41, L.44, L.51, E.117, A.132, S.133, Y.138, Y.153, S.158, Q.162 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.12, A:Y.19, A:Y.19, A:I.41, A:L.44, A:L.44, A:L.51, A:A.132 Hydrogen bonds: A:Q.12, A:Y.19, A:E.117, A:S.133, A:Y.138, A:Q.162, A:Q.162, A:Q.162 Water bridges: A:S.14, A:S.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chrustowicz, J. et al., Multifaceted N-Degron Recognition and Ubiquitylation by GID/CTLH E3 Ligases. J.Mol.Biol. (2022)

Release Date

2022-03-02

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog