SMTL ID : 7q86.1

Crystal structure of human peroxisomal acyl-Co-A oxidase 1a, FAD-bound-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: L.109, Q.145, T.146, G.151, T.152, W.183, P.184, G.185, Y.239, N.244, P.423, T.426, F.427, E.430, T.432, V.433, L.436 Chain B: R.314, Q.316, S.317, I.328, F.331, T.333, Q.334, K.337, A.402, G.404, G.405, Y.408 31 PLIP interactions: 15 interactions with chain B, 16 interactions with chain A Hydrophobic interactions: B:Y.408, A:W.183, A:W.183, A:W.183, A:Y.239 Hydrogen bonds: B:S.317, B:S.317, B:T.333, B:Q.334, B:K.337, B:A.402, B:G.405, A:Y.143, A:Q.145, A:T.146, A:T.146, A:T.152, A:T.152, A:G.185, A:N.244, A:E.430 Water bridges: B:R.314, B:H.406, B:H.406, B:H.406, A:E.428 Salt bridges: B:R.314, B:R.314 pi-Stacking: B:F.331, A:W.183, A:F.427 FAD.2: 31 residues within 4Å: Chain A: R.314, Q.316, S.317, I.328, F.331, T.333, Q.334, K.337, A.402, C.403, G.404, G.405, Y.408 Chain B: L.109, Y.143, Q.145, T.146, H.150, G.151, T.152, W.183, P.184, G.185, Y.239, N.244, P.423, T.426, F.427, E.430, T.432, V.433 30 PLIP interactions: 16 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:W.183, B:W.183, B:Y.239, B:P.423, A:Y.408 Hydrogen bonds: B:Y.143, B:Q.145, B:T.146, B:T.146, B:T.152, B:G.185, B:E.430, A:S.317, A:S.317, A:Q.334, A:K.337, A:A.402, A:G.405 Water bridges: B:G.151, B:N.244, B:E.428, B:T.432, A:R.314, A:T.333, A:H.406, A:H.406 pi-Stacking: B:F.427, A:F.331 Salt bridges: A:R.314, A:R.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sonani, R.R. et al., Crystal structures of apo- and FAD-bound human peroxisomal acyl-CoA oxidase provide mechanistic basis explaining clinical observations. Int.J.Biol.Macromol. (2022)

Release Date

2022-03-02

Peptides

Isoform 2 of Peroxisomal acyl-coenzyme A oxidase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isoform 2 of Peroxisomal acyl-coenzyme A oxidase 1

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