SMTL ID : 7q8s.1

Leishmania major ADP-actin filament decorated with Leishmania major cofilin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-mer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.14, S.15, G.16, M.17, K.19, A.156, G.157, D.158, K.214, E.215, G.303, M.306, F.307, K.337 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.15, A:S.15, A:G.16, A:M.17, A:D.158, A:D.158, A:D.158, A:K.214, A:E.215, A:E.215, A:G.303 Salt bridges: A:K.19, A:K.19 pi-Stacking: A:F.307 ADP.3: 15 residues within 4Å: Chain C: G.14, S.15, G.16, M.17, K.19, A.156, G.157, D.158, K.214, E.215, G.303, M.306, F.307, K.337 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.15, C:S.15, C:G.16, C:M.17, C:D.158, C:D.158, C:D.158, C:K.214, C:E.215, C:E.215, C:G.303 Salt bridges: C:K.19, C:K.19 pi-Stacking: C:F.307 ADP.5: 15 residues within 4Å: Chain E: G.14, S.15, G.16, M.17, K.19, A.156, G.157, D.158, K.214, E.215, G.303, M.306, F.307, K.337 Ligands: MG.6 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.15, E:S.15, E:G.16, E:M.17, E:D.158, E:D.158, E:D.158, E:K.214, E:E.215, E:E.215, E:G.303 Salt bridges: E:K.19, E:K.19 pi-Stacking: E:F.307 ADP.7: 15 residues within 4Å: Chain G: G.14, S.15, G.16, M.17, K.19, A.156, G.157, D.158, K.214, E.215, G.303, M.306, F.307, K.337 Ligands: MG.8 14 PLIP interactions: 14 interactions with chain G Hydrogen bonds: G:S.15, G:S.15, G:G.16, G:M.17, G:D.158, G:D.158, G:D.158, G:K.214, G:E.215, G:E.215, G:G.303 Salt bridges: G:K.19, G:K.19 pi-Stacking: G:F.307 ADP.9: 15 residues within 4Å: Chain I: G.14, S.15, G.16, M.17, K.19, A.156, G.157, D.158, K.214, E.215, G.303, M.306, F.307, K.337 Ligands: MG.10 14 PLIP interactions: 14 interactions with chain I Hydrogen bonds: I:S.15, I:S.15, I:G.16, I:M.17, I:D.158, I:D.158, I:D.158, I:K.214, I:E.215, I:E.215, I:G.303 Salt bridges: I:K.19, I:K.19 pi-Stacking: I:F.307

5 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Ligands: ADP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotila, T. et al., Structural basis of rapid actin dynamics in the evolutionarily divergent Leishmania parasite. Nat Commun (2022)

Release Date

2022-05-18

Peptides

Actin: ACEGI
ADF/Cofilin: BDFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
D

G
E

I
F

B
B

D
G

F
H

H
I

J
J

Actin

ADF/Cofilin

Related Entries With Identical Sequence