SMTL ID : 7q9e.3 (3 other biounits)

CYP106A1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: L.89, T.90, H.97, R.101, F.108, A.244, G.245, T.248, T.249, A.252, F.290, R.295, R.297, M.320, T.348, F.349, G.350, P.353, H.354, C.356, L.357, G.358, A.362 Ligands: PEG.5 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.90, A:F.108, A:A.244, A:A.252, A:F.290, A:R.295, A:T.348, A:F.349, A:L.357, A:A.362 Water bridges: A:H.354, A:H.354 Salt bridges: A:H.97, A:R.101, A:R.295, A:R.297, A:H.354 Metal complexes: A:C.356, H2O.5

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Q.132, K.133, R.410, H.412, H.413 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.132, A:H.413 Salt bridges: A:K.133, A:R.410, A:H.412 SO4.3: 2 residues within 4Å: Chain A: T.109, H.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.110 Water bridges: A:R.111 SO4.6: 2 residues within 4Å: Chain A: R.101, A.105 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.101 SO4.7: 3 residues within 4Å: Chain A: S.269, N.273, H.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.269, A:N.273 Salt bridges: A:H.379

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 2 residues within 4Å: Chain A: H.411, H.412 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.411, A:H.412

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: T.90, L.240, G.243, A.244, R.295 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.8: 2 residues within 4Å: Chain A: K.280, H.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.280, A:K.280, A:H.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carius, Y. et al., Structural comparison of the cytochrome P450 enzymes CYP106A1 and CYP106A2 provides insight into their differences in steroid conversion. Febs Lett. (2022)

Release Date

2022-10-19

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cytochrome P450

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