SMTL ID : 7q9u.1 (3 other biounits)

Crystal structure of the high affinity KRas mutant PDE6D complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, N.116, K.117, D.119, L.120, S.145, A.146, K.147 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.11, A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:S.17, A:S.17, A:A.18, A:N.116, A:K.117, A:K.117, A:S.145, A:A.146, A:K.147 Salt bridges: A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28 pi-Cation interactions: A:K.117

1 x FAR: FARNESYL(Covalent)

FAR.2: 2 residues within 4Å: Chain A: I.184, C.185 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelland, T. et al., Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem. (2022)

Release Date

2022-01-26

Peptides

GTPase KRas: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

GTPase KRas

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