SMTL ID : 7q9u.3 (3 other biounits)

Crystal structure of the high affinity KRas mutant PDE6D complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.61, Q.78, V.80, W.90, I.109, I.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.61

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.61, L.63, F.92, W.105, S.107 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.61, A:R.61, A:L.63, A:S.107, A:S.107 EDO.3: 2 residues within 4Å: Chain A: C.86, E.88 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yelland, T. et al., Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem. (2022)

Release Date

2022-01-26

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
DDD

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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