- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AN7: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid(Non-covalent)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: Q.309, H.310, F.311, G.312
- Ligands: NA.8
1 PLIP interactions:1 interactions with chain A- Water bridges: A:F.311
EDO.3: 1 residues within 4Å:- Chain A: E.248
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.248, A:E.248
EDO.18: 3 residues within 4Å:- Chain B: K.227, K.424, R.425
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.227
- Water bridges: B:K.224, B:K.227
- 39 x NA: SODIUM ION(Non-functional Binders)
NA.4: 2 residues within 4Å:- Chain A: E.376, I.378
Ligand excluded by PLIPNA.5: 6 residues within 4Å:- Chain A: W.222, G.226, K.227, D.228, M.229, R.425
Ligand excluded by PLIPNA.6: 3 residues within 4Å:- Chain A: R.393, T.397, E.477
Ligand excluded by PLIPNA.7: 2 residues within 4Å:- Chain A: P.142, A.143
Ligand excluded by PLIPNA.8: 5 residues within 4Å:- Chain A: E.304, Q.309, H.310
- Ligands: EDO.2, NA.16
Ligand excluded by PLIPNA.9: 2 residues within 4Å:- Chain A: Q.380, D.384
Ligand excluded by PLIPNA.10: 2 residues within 4Å:- Chain A: E.74, W.79
Ligand excluded by PLIPNA.11: 2 residues within 4Å:- Chain A: P.142, A.143
Ligand excluded by PLIPNA.12: 4 residues within 4Å:- Chain A: D.208
- Chain B: P.212
- Ligands: NA.14, NA.29
Ligand excluded by PLIPNA.13: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNA.14: 2 residues within 4Å:- Chain A: D.208
- Ligands: NA.12
Ligand excluded by PLIPNA.15: 4 residues within 4Å:- Chain A: F.56, Y.187, R.450
- Ligands: AN7.1
Ligand excluded by PLIPNA.16: 3 residues within 4Å:- Chain A: E.304, H.310
- Ligands: NA.8
Ligand excluded by PLIPNA.21: 3 residues within 4Å:- Chain B: E.244, K.245, E.248
Ligand excluded by PLIPNA.22: 1 residues within 4Å:- Ligands: NA.34
Ligand excluded by PLIPNA.23: 1 residues within 4Å:- Chain B: E.376
Ligand excluded by PLIPNA.24: 1 residues within 4Å:- Chain B: K.383
Ligand excluded by PLIPNA.25: 3 residues within 4Å:- Chain B: T.141, P.142
- Ligands: NA.27
Ligand excluded by PLIPNA.26: 2 residues within 4Å:- Chain B: T.465, E.468
Ligand excluded by PLIPNA.27: 6 residues within 4Å:- Chain B: V.140, T.141, P.142, W.305, Q.309
- Ligands: NA.25
Ligand excluded by PLIPNA.28: 1 residues within 4Å:- Chain B: W.221
Ligand excluded by PLIPNA.29: 2 residues within 4Å:- Chain B: P.212
- Ligands: NA.12
Ligand excluded by PLIPNA.30: 3 residues within 4Å:- Chain B: G.199, M.200, K.201
Ligand excluded by PLIPNA.31: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPNA.32: 2 residues within 4Å:- Chain B: R.240, R.281
Ligand excluded by PLIPNA.33: 1 residues within 4Å:- Chain B: E.402
Ligand excluded by PLIPNA.34: 1 residues within 4Å:- Ligands: NA.22
Ligand excluded by PLIPNA.35: 1 residues within 4Å:- Chain B: R.45
Ligand excluded by PLIPNA.36: 1 residues within 4Å:- Chain B: E.114
Ligand excluded by PLIPNA.37: 2 residues within 4Å:- Chain B: A.138, E.139
Ligand excluded by PLIPNA.38: 4 residues within 4Å:- Chain B: F.56, Y.187, R.450
- Ligands: AN7.17
Ligand excluded by PLIPNA.39: 1 residues within 4Å:- Chain B: D.287
Ligand excluded by PLIPNA.40: 2 residues within 4Å:- Chain B: G.144, K.338
Ligand excluded by PLIPNA.41: 2 residues within 4Å:- Chain B: R.374, D.375
Ligand excluded by PLIPNA.42: 3 residues within 4Å:- Chain B: A.371, R.374, D.375
Ligand excluded by PLIPNA.43: 2 residues within 4Å:- Chain B: L.437, D.440
Ligand excluded by PLIPNA.44: 1 residues within 4Å:- Chain B: E.376
Ligand excluded by PLIPNA.45: 1 residues within 4Å:- Chain B: V.475
Ligand excluded by PLIPNA.46: 2 residues within 4Å:- Chain B: T.436, D.440
Ligand excluded by PLIP- 1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PLP.19: 14 residues within 4Å:- Chain A: F.354, T.355
- Chain B: S.153, G.154, S.155, Y.187, H.188, G.189, E.260, D.293, V.295, I.296, K.322
- Ligands: AN7.17
16 PLIP interactions:12 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:Y.187, B:E.260, B:V.295, B:V.295
- Hydrogen bonds: B:G.154, B:S.155, B:K.322, A:T.355, A:T.355
- Water bridges: B:S.155, B:S.155, B:E.260, A:N.152, A:Y.356
- Salt bridges: B:K.322
- pi-Stacking: B:Y.187
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Isupov, M.N. et al., Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct. To Be Published
- Release Date
- 2022-11-23
- Peptides
- Probable aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBB
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AN7: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid(Non-covalent)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 39 x NA: SODIUM ION(Non-functional Binders)
- 1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Isupov, M.N. et al., Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct. To Be Published
- Release Date
- 2022-11-23
- Peptides
- Probable aminotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBB