SMTL ID : 7qaa.1

Crystal structure of RARalpha/RXRalpha ligand binding domain heterodimer in complex with BMS614 and oleic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 14 residues within 4Å: Chain A: A.47, Q.51, F.89, R.92, I.100, L.102, A.103, V.118, I.121, F.122, C.208, H.211, F.215, L.217 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.89, A:F.89, A:I.100, A:V.118, A:I.121, A:F.122, A:H.211, A:F.215, A:L.217 Hydrogen bonds: A:A.103 Water bridges: A:Q.51 Salt bridges: A:R.92

1 x BMS: 4-[(4,4-DIMETHYL-1,2,3,4-TETRAHYDRO-[1,2']BINAPTHALENYL-7-CARBONYL)-AMINO]-BENZOIC ACID(Non-covalent)

BMS.2: 20 residues within 4Å: Chain B: F.18, F.47, S.48, L.50, S.51, T.52, C.54, L.85, L.88, I.89, I.92, R.95, F.105, S.106, G.120, F.121, G.210, R.213, V.214, M.225 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.47, B:F.47, B:L.50, B:L.85, B:L.88, B:I.89, B:I.92, B:F.105, B:F.105, B:F.121, B:F.121, B:R.213 Hydrogen bonds: B:S.51, B:S.106 Salt bridges: B:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

le Maire, A. et al., Design and in vitro characterization of RXR variants as tools to investigate the biological role of endogenous rexinoids. J.Mol.Endocrinol. (2022)

Release Date

2022-10-05

Peptides

Retinoic acid receptor RXR-alpha: A
Isoform Alpha-1-deltaBC of Retinoic acid receptor alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoic acid receptor RXR-alpha

Isoform Alpha-1-deltaBC of Retinoic acid receptor alpha

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