SMTL ID : 7qar.1

Serial crystallography structure of cofactor-free urate oxidase in complex with the 5-peroxo derivative of 9-methyl uric acid at room temperature

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x XDS: (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione(Non-covalent)

XDS.1: 14 residues within 4Å: Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, H.257, G.287, I.289 Chain B: I.55, A.57, T.58, D.59 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:T.58, B:T.58, B:D.59, A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255 XDS.2: 14 residues within 4Å: Chain A: I.55, A.57, T.58, D.59 Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, H.257, G.287, I.289 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:T.58, A:T.58, A:D.59, B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255 XDS.3: 14 residues within 4Å: Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, H.257, G.287, I.289 Chain D: I.55, A.57, T.58, D.59 8 PLIP interactions: 2 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:T.58, D:D.59, C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255 XDS.4: 14 residues within 4Å: Chain C: I.55, A.57, T.58, D.59 Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, H.257, G.287, I.289 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:T.58, C:D.59, D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zielinski, K.A. et al., Rapid and efficient room-temperature serial synchrotron crystallography using the CFEL TapeDrive. Iucrj (2022)

Release Date

2023-04-26

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

C
AAA

D
AAA

Uricase

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