SMTL ID : 7qb6.1

Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with 3-carboxybenzophenone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

homo-dimer

Ligands

1 x A8I: 3-benzoylbenzoic acid(Non-covalent)

A8I.1: 12 residues within 4Å: Chain A: I.29, Y.37, F.44, L.63, Q.74, Y.88, F.106, F.108, R.146, F.147, F.150, T.151 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.29, A:F.44, A:L.63, A:Y.88, A:F.108, A:F.147, A:F.147, A:F.150 Hydrogen bonds: A:Y.37, A:Q.74 pi-Stacking: A:F.150

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 2 residues within 4Å: Chain B: F.44, F.69 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ignasiak-Kciuk, M. et al., Does the presence of ground state complex between a PR-10 protein and a sensitizer affect the mechanism of sensitized photo-oxidation?. Free Radic Biol Med (2023)

Release Date

2022-10-26

Peptides

Nodulin-13: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nodulin-13