SMTL ID : 7qce.1 (1 other biounit)

Crystal structure of an atypical PHD finger of VIN3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.19, C.24, C.35, C.38 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.24, A:C.35, A:C.38 ZN.2: 4 residues within 4Å: Chain A: C.40, C.43, H.74, C.77 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:C.43, A:H.74, A:C.77 ZN.3: 4 residues within 4Å: Chain A: C.58, C.69, C.101, C.104 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.58, A:C.69, A:C.101, A:C.104

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: C.104, G.105 Ligands: PEG.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.101 PEG.5: 5 residues within 4Å: Chain A: T.83, C.91, Y.92, Y.100 Ligands: PEG.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franco-Echevarria, E. et al., Plant vernalization proteins contain unusual PHD superdomains without histone H3 binding activity. J.Biol.Chem. (2022)

Release Date

2022-11-16

Peptides

VIN3 (Protein VERNALIZATION INSENSITIVE 3): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VIN3 (Protein VERNALIZATION INSENSITIVE 3)

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