SMTL ID : 7qdf.1

Hexameric HIV-1 (M-group) CA R120 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: R.174 Chain E: G.61, Q.63 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: G.157, P.158, K.159 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain B: R.174 Chain F: G.61, Q.63 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain B: G.157, P.158, K.159 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain C: R.174 Chain D: G.61, Q.63 Ligand excluded by PLIP IOD.18: 3 residues within 4Å: Chain C: G.157, P.158, K.159 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain B: G.61, Q.63 Chain D: R.174 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain D: G.157, P.158, K.159 Ligand excluded by PLIP IOD.33: 3 residues within 4Å: Chain C: G.61, Q.63 Chain E: R.174 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain E: G.157, P.158, K.159 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain A: G.61, Q.63 Chain F: R.174 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain F: G.157, P.158, K.159 Ligand excluded by PLIP

30 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Q.220 Chain E: M.145, Y.146 Ligands: CL.5 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain F: R.18 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.163 Ligands: CL.3 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: N.57 Chain F: P.38 Ligands: BME.48 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: L.173, K.183 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: Q.220 Chain F: M.145, Y.146 Ligands: CL.13 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain D: R.18 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: R.163 Ligands: CL.11 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: N.57 Chain D: P.38 Ligands: BME.32 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: L.173, K.183 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain C: Q.220 Chain D: M.145, Y.146 Ligands: CL.21 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain E: R.18 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain C: R.163 Ligands: CL.19 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: N.57 Chain E: P.38 Ligands: BME.40 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain C: L.173, K.183 Ligand excluded by PLIP CL.27: 4 residues within 4Å: Chain B: M.145, Y.146 Chain D: Q.220 Ligands: CL.29 Ligand excluded by PLIP CL.28: 1 residues within 4Å: Chain C: R.18 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain D: R.163 Ligands: CL.27 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain C: P.38 Chain D: N.57 Ligands: BME.24 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain D: L.173, K.183 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain C: M.145, Y.146 Chain E: Q.220 Ligands: CL.37 Ligand excluded by PLIP CL.36: 1 residues within 4Å: Chain A: R.18 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain E: R.163 Ligands: CL.35 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain A: P.38 Chain E: N.57 Ligands: BME.8 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain E: L.173, K.183 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain A: M.145, Y.146 Chain F: Q.220 Ligands: CL.45 Ligand excluded by PLIP CL.44: 1 residues within 4Å: Chain B: R.18 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain F: R.163 Ligands: CL.43 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain B: P.38 Chain F: N.57 Ligands: BME.16 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain F: L.173, K.183 Ligand excluded by PLIP

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.8: 4 residues within 4Å: Chain A: I.37, P.38, S.41 Ligands: CL.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.140 BME.16: 4 residues within 4Å: Chain B: I.37, P.38, S.41 Ligands: CL.46 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.140 BME.24: 4 residues within 4Å: Chain C: I.37, P.38, S.41 Ligands: CL.30 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.140 BME.32: 4 residues within 4Å: Chain D: I.37, P.38, S.41 Ligands: CL.14 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.140 BME.40: 4 residues within 4Å: Chain E: I.37, P.38, S.41 Ligands: CL.22 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.140 BME.48: 4 residues within 4Å: Chain F: I.37, P.38, S.41 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zuliani-Alvarez, L. et al., Evasion of cGAS and TRIM5 defines pandemic HIV. Nat Microbiol (2022)

Release Date

2022-10-19

Peptides

Gag polyprotein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

C
AAA

D
AAA

E
AAA

F
AAA

Gag polyprotein