SMTL ID : 7qe2.2 (1 other biounit)

Crystal structure of D-glucuronic acid bound to SN243

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x BDP: beta-D-glucopyranuronic acid(Non-covalent)

BDP.1: 12 residues within 4Å: Chain A: R.106, N.156, Y.228, R.242, K.288, H.289, H.303, Y.338, Y.339, D.385, T.386, F.622 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.156, A:N.156, A:R.242, A:R.242, A:K.288, A:H.289, A:H.303, A:Y.339, A:T.386 Salt bridges: A:R.106, A:H.303

14 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.23 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.23 ZN.3: 2 residues within 4Å: Chain A: N.96, H.99 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.99, H2O.4 ZN.4: 2 residues within 4Å: Chain A: H.244, R.673 No protein-ligand interaction detected (PLIP) ZN.5: 1 residues within 4Å: Chain A: E.217 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.217 ZN.6: 2 residues within 4Å: Chain A: D.662, P.663 No protein-ligand interaction detected (PLIP) ZN.7: 2 residues within 4Å: Chain A: D.474, H.475 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.475, H2O.2, H2O.5, H2O.6, H2O.6 ZN.8: 2 residues within 4Å: Chain A: D.462, D.464 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.462, A:D.462, H2O.1, H2O.6 ZN.9: 2 residues within 4Å: Chain A: H.99, H.101 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.101, H2O.2 ZN.10: 1 residues within 4Å: Chain A: E.526 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.526, A:E.526, H2O.4, H2O.5 ZN.11: 2 residues within 4Å: Chain A: S.423, D.427 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.427, H2O.4, H2O.6 ZN.12: 2 residues within 4Å: Chain A: R.404, E.610 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.610, A:E.610 ZN.13: 6 residues within 4Å: Chain A: D.31, N.33, N.35, E.37, D.39, E.42 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.31, A:E.37, A:D.39, A:E.42, A:E.42 ZN.14: 5 residues within 4Å: Chain A: T.236, Q.729, D.730, R.733, G.735 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.236, A:D.730, A:R.733, H2O.1 ZN.15: 6 residues within 4Å: Chain A: Q.296, E.297, L.300, P.302, G.307, A.309 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.300, A:G.307, A:A.309

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.16: 2 residues within 4Å: Chain A: E.256, E.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neun, S. et al., Functional metagenomic screening identifies an unexpected beta-glucuronidase. Nat.Chem.Biol. (2022)

Release Date

2022-10-12

Peptides

SN243: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SN243

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