SMTL ID : 7qei.1

Structure of human MTHFD2L in complex with TH7299

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 9L9: (2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid(Non-covalent)

9L9.1: 18 residues within 4Å: Chain A: T.49, Y.50, N.53, K.54, V.97, Q.98, L.99, D.121, F.123, I.242, Y.244, L.255, P.275, G.276, G.279, P.280, T.282, V.283 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.50, A:L.255, A:T.282, A:V.283 Hydrogen bonds: A:N.53, A:K.54, A:V.97, A:Q.98, A:L.99, A:L.99, A:Y.244, A:Y.244, A:G.276, A:G.279 Water bridges: A:K.54, A:D.121, A:A.141, A:A.141, A:T.142, A:G.277, A:G.277 Salt bridges: A:D.121 pi-Stacking: A:Y.50 pi-Cation interactions: A:K.54

1 x ATR: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ATR.2: 10 residues within 4Å: Chain A: A.165, G.166, R.167, S.168, H.198, R.199, A.219, A.220, I.222, L.225 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.167, A:S.168, A:R.199 Water bridges: A:S.168, A:S.168, A:H.198, A:T.201, A:A.219 Salt bridges: A:R.167, A:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E.R. et al., The First Structure of Human MTHFD2L and Its Implications for the Development of Isoform-Selective Inhibitors. Chemmedchem (2022)

Release Date

2022-10-12

Peptides

Probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2