SMTL ID : 7qeq.1

human Connexin 26 dodecamer at 90mmHg PCO2, pH7.4

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

48 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)

LMT.1: 3 residues within 4Å: Chain A: P.87, L.90, F.142 Ligand excluded by PLIP LMT.3: 3 residues within 4Å: Chain A: T.189, V.190 Ligands: LMT.5 Ligand excluded by PLIP LMT.4: 1 residues within 4Å: Chain A: W.24 Ligand excluded by PLIP LMT.5: 4 residues within 4Å: Chain A: V.193, F.194, A.197 Ligands: LMT.3 Ligand excluded by PLIP LMT.6: 3 residues within 4Å: Chain B: P.87, L.90, F.142 Ligand excluded by PLIP LMT.8: 2 residues within 4Å: Chain B: V.190 Ligands: LMT.10 Ligand excluded by PLIP LMT.9: 1 residues within 4Å: Chain B: W.24 Ligand excluded by PLIP LMT.10: 3 residues within 4Å: Chain B: F.194, A.197 Ligands: LMT.8 Ligand excluded by PLIP LMT.11: 3 residues within 4Å: Chain C: P.87, L.90, F.142 Ligand excluded by PLIP LMT.13: 2 residues within 4Å: Chain C: V.190 Ligands: LMT.15 Ligand excluded by PLIP LMT.14: 1 residues within 4Å: Chain C: W.24 Ligand excluded by PLIP LMT.15: 3 residues within 4Å: Chain C: F.194, A.197 Ligands: LMT.13 Ligand excluded by PLIP LMT.16: 3 residues within 4Å: Chain D: P.87, L.90, F.142 Ligand excluded by PLIP LMT.18: 2 residues within 4Å: Chain D: V.190 Ligands: LMT.20 Ligand excluded by PLIP LMT.19: 1 residues within 4Å: Chain D: W.24 Ligand excluded by PLIP LMT.20: 3 residues within 4Å: Chain D: F.194, A.197 Ligands: LMT.18 Ligand excluded by PLIP LMT.21: 3 residues within 4Å: Chain E: P.87, L.90, F.142 Ligand excluded by PLIP LMT.23: 3 residues within 4Å: Chain E: T.189, V.190 Ligands: LMT.25 Ligand excluded by PLIP LMT.24: 1 residues within 4Å: Chain E: W.24 Ligand excluded by PLIP LMT.25: 3 residues within 4Å: Chain E: F.194, A.197 Ligands: LMT.23 Ligand excluded by PLIP LMT.26: 3 residues within 4Å: Chain F: T.189, V.190 Ligands: LMT.28 Ligand excluded by PLIP LMT.27: 1 residues within 4Å: Chain F: W.24 Ligand excluded by PLIP LMT.28: 4 residues within 4Å: Chain F: V.193, F.194, A.197 Ligands: LMT.26 Ligand excluded by PLIP LMT.29: 3 residues within 4Å: Chain F: P.87, L.90, F.142 Ligand excluded by PLIP LMT.31: 3 residues within 4Å: Chain G: P.87, L.90, F.142 Ligand excluded by PLIP LMT.33: 1 residues within 4Å: Ligands: LMT.35 Ligand excluded by PLIP LMT.34: 1 residues within 4Å: Chain G: W.24 Ligand excluded by PLIP LMT.35: 3 residues within 4Å: Chain G: F.194, A.197 Ligands: LMT.33 Ligand excluded by PLIP LMT.36: 3 residues within 4Å: Chain H: P.87, L.90, F.142 Ligand excluded by PLIP LMT.38: 3 residues within 4Å: Chain H: T.189, V.190 Ligands: LMT.40 Ligand excluded by PLIP LMT.39: 1 residues within 4Å: Chain H: W.24 Ligand excluded by PLIP LMT.40: 4 residues within 4Å: Chain H: V.193, F.194, A.197 Ligands: LMT.38 Ligand excluded by PLIP LMT.41: 3 residues within 4Å: Chain I: P.87, L.90, F.142 Ligand excluded by PLIP LMT.43: 3 residues within 4Å: Chain I: T.189, V.190 Ligands: LMT.45 Ligand excluded by PLIP LMT.44: 1 residues within 4Å: Chain I: W.24 Ligand excluded by PLIP LMT.45: 3 residues within 4Å: Chain I: F.194, A.197 Ligands: LMT.43 Ligand excluded by PLIP LMT.46: 3 residues within 4Å: Chain J: P.87, L.90, F.142 Ligand excluded by PLIP LMT.48: 2 residues within 4Å: Chain J: V.190 Ligands: LMT.50 Ligand excluded by PLIP LMT.49: 1 residues within 4Å: Chain J: W.24 Ligand excluded by PLIP LMT.50: 3 residues within 4Å: Chain J: F.194, A.197 Ligands: LMT.48 Ligand excluded by PLIP LMT.51: 3 residues within 4Å: Chain K: P.87, L.90, F.142 Ligand excluded by PLIP LMT.53: 2 residues within 4Å: Chain K: V.190 Ligands: LMT.55 Ligand excluded by PLIP LMT.54: 1 residues within 4Å: Chain K: W.24 Ligand excluded by PLIP LMT.55: 3 residues within 4Å: Chain K: F.194, A.197 Ligands: LMT.53 Ligand excluded by PLIP LMT.56: 1 residues within 4Å: Ligands: LMT.58 Ligand excluded by PLIP LMT.57: 1 residues within 4Å: Chain L: W.24 Ligand excluded by PLIP LMT.58: 3 residues within 4Å: Chain L: F.194, A.197 Ligands: LMT.56 Ligand excluded by PLIP LMT.59: 3 residues within 4Å: Chain L: P.87, L.90, F.142 Ligand excluded by PLIP

12 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.2: 2 residues within 4Å: Chain A: M.157 Chain F: V.190 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:V.190 PTY.7: 2 residues within 4Å: Chain A: V.190 Chain B: M.157 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.190 PTY.12: 2 residues within 4Å: Chain B: V.190 Chain C: M.157 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.190 PTY.17: 1 residues within 4Å: Chain D: M.157 No protein-ligand interaction detected (PLIP) PTY.22: 1 residues within 4Å: Chain E: M.157 No protein-ligand interaction detected (PLIP) PTY.30: 2 residues within 4Å: Chain E: V.190 Chain F: M.157 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:V.190 PTY.32: 1 residues within 4Å: Chain G: M.157 No protein-ligand interaction detected (PLIP) PTY.37: 1 residues within 4Å: Chain H: M.157 No protein-ligand interaction detected (PLIP) PTY.42: 2 residues within 4Å: Chain H: V.190 Chain I: M.157 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:V.190 PTY.47: 2 residues within 4Å: Chain I: V.190 Chain J: M.157 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:V.190 PTY.52: 1 residues within 4Å: Chain K: M.157 No protein-ligand interaction detected (PLIP) PTY.60: 1 residues within 4Å: Chain L: M.157 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brotherton, D.H. et al., Conformational changes and CO 2 -induced channel gating in connexin26. Structure (2022)

Release Date

2022-03-30

Peptides

Gap junction beta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Gap junction beta-2 protein

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