SMTL ID : 7qf6.1 (1 other biounit)

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-tetramer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: L.312, H.317, E.334, D.341, H.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.317, A:H.357 GOL.2: 5 residues within 4Å: Chain A: P.199, S.218, S.219 Chain D: P.199, S.219 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:S.218, A:S.219, D:S.218 Water bridges: A:S.218 GOL.3: 9 residues within 4Å: Chain A: R.356, H.357, S.358, W.375, G.394, E.395, P.396, V.403, E.407 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.356, A:S.358, A:E.395, A:E.407 Water bridges: A:R.356, A:S.358, A:S.358 GOL.4: 3 residues within 4Å: Chain A: V.52, T.76, H.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.76, A:T.76 Water bridges: A:T.76 GOL.5: 8 residues within 4Å: Chain B: P.246, K.248, P.249, K.316, H.317, V.318, W.337, R.354 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.317, B:W.337, B:R.354 Water bridges: B:L.319, B:D.385, B:D.385 GOL.6: 9 residues within 4Å: Chain B: R.356, H.357, S.358, W.375, G.394, E.395, P.396, V.403, E.407 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.356, B:S.358, B:E.395 Water bridges: B:R.356, B:S.358, B:S.358 GOL.8: 5 residues within 4Å: Chain C: L.312, H.317, E.334, D.341, H.357 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.341, C:H.357 Water bridges: C:H.342 GOL.9: 7 residues within 4Å: Chain A: H.346, K.416 Chain B: E.433 Chain C: Y.227, R.241, K.339, D.351 6 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:R.241, C:D.351, A:K.416, A:K.416, B:E.433 Water bridges: C:K.339 GOL.11: 5 residues within 4Å: Chain D: R.101, R.139, F.163, T.179, T.181 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.139, D:T.179 GOL.12: 9 residues within 4Å: Chain D: R.356, H.357, S.358, W.375, G.394, E.395, P.396, V.403, E.407 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.356, D:S.358, D:E.395, D:E.407 Water bridges: D:R.356, D:R.356, D:S.358

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.7: 5 residues within 4Å: Chain B: H.34, P.35, V.205, H.207, L.254 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-covalent)

K.10: 2 residues within 4Å: Chain B: P.387 Chain C: P.387 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poonsiri, T. et al., N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF. To Be Published

Release Date

2022-12-14

Peptides

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

D
F

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF

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